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Genome-Wide Identification and Analysis of HAK/KUP/KT Potassium Transporters Gene Family in Wheat (Triticum aestivum L.)
In plants, the HAK (high-affinity K(+))/KUP (K(+) uptake)/KT (K(+) transporter) family represents a large group of potassium transporters that play important roles in plant growth and environmental adaptation. Although HAK/KUP/KT genes have been extensively investigated in many plant species, they r...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321448/ https://www.ncbi.nlm.nih.gov/pubmed/30544665 http://dx.doi.org/10.3390/ijms19123969 |
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author | Cheng, Xiyong Liu, Xiaodan Mao, Weiwei Zhang, Xurui Chen, Shulin Zhan, Kehui Bi, Huihui Xu, Haixia |
author_facet | Cheng, Xiyong Liu, Xiaodan Mao, Weiwei Zhang, Xurui Chen, Shulin Zhan, Kehui Bi, Huihui Xu, Haixia |
author_sort | Cheng, Xiyong |
collection | PubMed |
description | In plants, the HAK (high-affinity K(+))/KUP (K(+) uptake)/KT (K(+) transporter) family represents a large group of potassium transporters that play important roles in plant growth and environmental adaptation. Although HAK/KUP/KT genes have been extensively investigated in many plant species, they remain uncharacterized in wheat, especially those involved in the response to environmental stresses. In this study, 56 wheat HAK/KUP/KT (hereafter called TaHAKs) genes were identified by a genome-wide search using recently released wheat genomic data. Phylogenetic analysis grouped these genes into four clusters (Ι, II, III, IV), containing 22, 19, 7 and 8 genes, respectively. Chromosomal distribution, gene structure, and conserved motif analyses of the 56 TaHAK genes were subsequently performed. In silico RNA-seq data analysis revealed that TaHAKs from clusters II and III are constitutively expressed in various wheat tissues, while most genes from clusters I and IV have very low expression levels in the examined tissues at different developmental stages. qRT-PCR analysis showed that expression levels of TaHAK genes in wheat seedlings were significantly up- or downregulated when seedlings were exposed to K(+) deficiency, high salinity, or dehydration. Furthermore, we functionally characterized TaHAK1b-2BL and showed that it facilitates K(+) transport in yeast. Collectively, these results provide valuable information for further functional studies of TaHAKs, and contribute to a better understanding of the molecular basis of wheat development and stress tolerance. |
format | Online Article Text |
id | pubmed-6321448 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-63214482019-01-07 Genome-Wide Identification and Analysis of HAK/KUP/KT Potassium Transporters Gene Family in Wheat (Triticum aestivum L.) Cheng, Xiyong Liu, Xiaodan Mao, Weiwei Zhang, Xurui Chen, Shulin Zhan, Kehui Bi, Huihui Xu, Haixia Int J Mol Sci Article In plants, the HAK (high-affinity K(+))/KUP (K(+) uptake)/KT (K(+) transporter) family represents a large group of potassium transporters that play important roles in plant growth and environmental adaptation. Although HAK/KUP/KT genes have been extensively investigated in many plant species, they remain uncharacterized in wheat, especially those involved in the response to environmental stresses. In this study, 56 wheat HAK/KUP/KT (hereafter called TaHAKs) genes were identified by a genome-wide search using recently released wheat genomic data. Phylogenetic analysis grouped these genes into four clusters (Ι, II, III, IV), containing 22, 19, 7 and 8 genes, respectively. Chromosomal distribution, gene structure, and conserved motif analyses of the 56 TaHAK genes were subsequently performed. In silico RNA-seq data analysis revealed that TaHAKs from clusters II and III are constitutively expressed in various wheat tissues, while most genes from clusters I and IV have very low expression levels in the examined tissues at different developmental stages. qRT-PCR analysis showed that expression levels of TaHAK genes in wheat seedlings were significantly up- or downregulated when seedlings were exposed to K(+) deficiency, high salinity, or dehydration. Furthermore, we functionally characterized TaHAK1b-2BL and showed that it facilitates K(+) transport in yeast. Collectively, these results provide valuable information for further functional studies of TaHAKs, and contribute to a better understanding of the molecular basis of wheat development and stress tolerance. MDPI 2018-12-10 /pmc/articles/PMC6321448/ /pubmed/30544665 http://dx.doi.org/10.3390/ijms19123969 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Cheng, Xiyong Liu, Xiaodan Mao, Weiwei Zhang, Xurui Chen, Shulin Zhan, Kehui Bi, Huihui Xu, Haixia Genome-Wide Identification and Analysis of HAK/KUP/KT Potassium Transporters Gene Family in Wheat (Triticum aestivum L.) |
title | Genome-Wide Identification and Analysis of HAK/KUP/KT Potassium Transporters Gene Family in Wheat (Triticum aestivum L.) |
title_full | Genome-Wide Identification and Analysis of HAK/KUP/KT Potassium Transporters Gene Family in Wheat (Triticum aestivum L.) |
title_fullStr | Genome-Wide Identification and Analysis of HAK/KUP/KT Potassium Transporters Gene Family in Wheat (Triticum aestivum L.) |
title_full_unstemmed | Genome-Wide Identification and Analysis of HAK/KUP/KT Potassium Transporters Gene Family in Wheat (Triticum aestivum L.) |
title_short | Genome-Wide Identification and Analysis of HAK/KUP/KT Potassium Transporters Gene Family in Wheat (Triticum aestivum L.) |
title_sort | genome-wide identification and analysis of hak/kup/kt potassium transporters gene family in wheat (triticum aestivum l.) |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321448/ https://www.ncbi.nlm.nih.gov/pubmed/30544665 http://dx.doi.org/10.3390/ijms19123969 |
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