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Identifying neuropsychiatric disorders using unsupervised clustering methods: Data and code

This article provides data for five different neuropsychiatric disorders—Attention Deficit Hyperactivity Disorder, Alzheimer's Disease, Autism Spectrum Disorder, Post-Traumatic Stress Disorder, and Post-Concussion Syndrome–along with healthy controls. The data includes clinical diagnostic label...

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Detalles Bibliográficos
Autores principales: Zhao, Xinyu, Rangaprakash, D., Denney, Thomas S., Katz, Jeffrey S., Dretsch, Michael N., Deshpande, Gopikrishna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321965/
https://www.ncbi.nlm.nih.gov/pubmed/30627610
http://dx.doi.org/10.1016/j.dib.2018.01.080
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author Zhao, Xinyu
Rangaprakash, D.
Denney, Thomas S.
Katz, Jeffrey S.
Dretsch, Michael N.
Deshpande, Gopikrishna
author_facet Zhao, Xinyu
Rangaprakash, D.
Denney, Thomas S.
Katz, Jeffrey S.
Dretsch, Michael N.
Deshpande, Gopikrishna
author_sort Zhao, Xinyu
collection PubMed
description This article provides data for five different neuropsychiatric disorders—Attention Deficit Hyperactivity Disorder, Alzheimer's Disease, Autism Spectrum Disorder, Post-Traumatic Stress Disorder, and Post-Concussion Syndrome–along with healthy controls. The data includes clinical diagnostic labels, phenotypic variables, and resting-state functional magnetic resonance imaging connectivity features obtained from individuals. In addition, it provides the source MATLAB codes used for data analyses. Three existing clustering methods have been incorporated into the provided code, which do not require a priori specification of the number of clusters. A genetic algorithm based feature selection method has also been included to find the relevant subset of features and clustering the subset of data simultaneously. Findings from this data set and further detailed interpretations are available in our recent research study (Zhao et al., 2017) [1]. This contribution is a valuable asset for performing unsupervised machine learning on fMRI data to investigate the correspondence of clinical diagnostic grouping with the underlying neurobiological/phenotypic clusters.
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spelling pubmed-63219652019-01-09 Identifying neuropsychiatric disorders using unsupervised clustering methods: Data and code Zhao, Xinyu Rangaprakash, D. Denney, Thomas S. Katz, Jeffrey S. Dretsch, Michael N. Deshpande, Gopikrishna Data Brief Neuroscience This article provides data for five different neuropsychiatric disorders—Attention Deficit Hyperactivity Disorder, Alzheimer's Disease, Autism Spectrum Disorder, Post-Traumatic Stress Disorder, and Post-Concussion Syndrome–along with healthy controls. The data includes clinical diagnostic labels, phenotypic variables, and resting-state functional magnetic resonance imaging connectivity features obtained from individuals. In addition, it provides the source MATLAB codes used for data analyses. Three existing clustering methods have been incorporated into the provided code, which do not require a priori specification of the number of clusters. A genetic algorithm based feature selection method has also been included to find the relevant subset of features and clustering the subset of data simultaneously. Findings from this data set and further detailed interpretations are available in our recent research study (Zhao et al., 2017) [1]. This contribution is a valuable asset for performing unsupervised machine learning on fMRI data to investigate the correspondence of clinical diagnostic grouping with the underlying neurobiological/phenotypic clusters. Elsevier 2018-02-02 /pmc/articles/PMC6321965/ /pubmed/30627610 http://dx.doi.org/10.1016/j.dib.2018.01.080 Text en © 2018 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Neuroscience
Zhao, Xinyu
Rangaprakash, D.
Denney, Thomas S.
Katz, Jeffrey S.
Dretsch, Michael N.
Deshpande, Gopikrishna
Identifying neuropsychiatric disorders using unsupervised clustering methods: Data and code
title Identifying neuropsychiatric disorders using unsupervised clustering methods: Data and code
title_full Identifying neuropsychiatric disorders using unsupervised clustering methods: Data and code
title_fullStr Identifying neuropsychiatric disorders using unsupervised clustering methods: Data and code
title_full_unstemmed Identifying neuropsychiatric disorders using unsupervised clustering methods: Data and code
title_short Identifying neuropsychiatric disorders using unsupervised clustering methods: Data and code
title_sort identifying neuropsychiatric disorders using unsupervised clustering methods: data and code
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321965/
https://www.ncbi.nlm.nih.gov/pubmed/30627610
http://dx.doi.org/10.1016/j.dib.2018.01.080
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