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Dataset from de novo transcriptome assembly of Nephelium lappaceum aril

Nephelium lappaceum (Rambutan), is one of tropical fruit in which - cultivated widely in Indonesia and has good taste and aroma. However, the transcriptomic study of rambutan has limited. In this study, we performed transcriptome assembly using paired-end Illumina technology. The assembled transcrip...

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Autores principales: Matra, Deden Derajat, Ritonga, Arya Widura, Natawijaya, Azis, Poerwanto, Roedhy, Sobir, Widodo, Winarso Drajad, Inoue, Eiichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321968/
https://www.ncbi.nlm.nih.gov/pubmed/30627609
http://dx.doi.org/10.1016/j.dib.2018.12.034
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author Matra, Deden Derajat
Ritonga, Arya Widura
Natawijaya, Azis
Poerwanto, Roedhy
Sobir
Widodo, Winarso Drajad
Inoue, Eiichi
author_facet Matra, Deden Derajat
Ritonga, Arya Widura
Natawijaya, Azis
Poerwanto, Roedhy
Sobir
Widodo, Winarso Drajad
Inoue, Eiichi
author_sort Matra, Deden Derajat
collection PubMed
description Nephelium lappaceum (Rambutan), is one of tropical fruit in which - cultivated widely in Indonesia and has good taste and aroma. However, the transcriptomic study of rambutan has limited. In this study, we performed transcriptome assembly using paired-end Illumina technology. The assembled transcriptome was constructed using Trinity and after filtering and removal sequences redundancy produced 36,303 contigs. The contig ranged 201–11,770 bp and N50 has 1327 bp. The contig was annotated with several databases such as SwissProt, TrEMBL, and nr/nt of NCBI databases. The raw reads are deposited in the DDBJ with DRA accession number, DRA007359: https://www.ncbi.nlm.nih.gov/sra/?term=DRA007359. The assembled contigs of transcriptome are deposited in the DDBJ TSA repository with accession number IADQ01000001–IADQ01036303: ftp://ftp.ddbj.nig.ac.jp/ddbj_database/tsa/IADQ.gz and also can be accessed at http://rujakbase.id.
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spelling pubmed-63219682019-01-09 Dataset from de novo transcriptome assembly of Nephelium lappaceum aril Matra, Deden Derajat Ritonga, Arya Widura Natawijaya, Azis Poerwanto, Roedhy Sobir Widodo, Winarso Drajad Inoue, Eiichi Data Brief Agricultural and Biological Science Nephelium lappaceum (Rambutan), is one of tropical fruit in which - cultivated widely in Indonesia and has good taste and aroma. However, the transcriptomic study of rambutan has limited. In this study, we performed transcriptome assembly using paired-end Illumina technology. The assembled transcriptome was constructed using Trinity and after filtering and removal sequences redundancy produced 36,303 contigs. The contig ranged 201–11,770 bp and N50 has 1327 bp. The contig was annotated with several databases such as SwissProt, TrEMBL, and nr/nt of NCBI databases. The raw reads are deposited in the DDBJ with DRA accession number, DRA007359: https://www.ncbi.nlm.nih.gov/sra/?term=DRA007359. The assembled contigs of transcriptome are deposited in the DDBJ TSA repository with accession number IADQ01000001–IADQ01036303: ftp://ftp.ddbj.nig.ac.jp/ddbj_database/tsa/IADQ.gz and also can be accessed at http://rujakbase.id. Elsevier 2018-12-14 /pmc/articles/PMC6321968/ /pubmed/30627609 http://dx.doi.org/10.1016/j.dib.2018.12.034 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Agricultural and Biological Science
Matra, Deden Derajat
Ritonga, Arya Widura
Natawijaya, Azis
Poerwanto, Roedhy
Sobir
Widodo, Winarso Drajad
Inoue, Eiichi
Dataset from de novo transcriptome assembly of Nephelium lappaceum aril
title Dataset from de novo transcriptome assembly of Nephelium lappaceum aril
title_full Dataset from de novo transcriptome assembly of Nephelium lappaceum aril
title_fullStr Dataset from de novo transcriptome assembly of Nephelium lappaceum aril
title_full_unstemmed Dataset from de novo transcriptome assembly of Nephelium lappaceum aril
title_short Dataset from de novo transcriptome assembly of Nephelium lappaceum aril
title_sort dataset from de novo transcriptome assembly of nephelium lappaceum aril
topic Agricultural and Biological Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321968/
https://www.ncbi.nlm.nih.gov/pubmed/30627609
http://dx.doi.org/10.1016/j.dib.2018.12.034
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