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Dataset from de novo transcriptome assembly of Nephelium lappaceum aril
Nephelium lappaceum (Rambutan), is one of tropical fruit in which - cultivated widely in Indonesia and has good taste and aroma. However, the transcriptomic study of rambutan has limited. In this study, we performed transcriptome assembly using paired-end Illumina technology. The assembled transcrip...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321968/ https://www.ncbi.nlm.nih.gov/pubmed/30627609 http://dx.doi.org/10.1016/j.dib.2018.12.034 |
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author | Matra, Deden Derajat Ritonga, Arya Widura Natawijaya, Azis Poerwanto, Roedhy Sobir Widodo, Winarso Drajad Inoue, Eiichi |
author_facet | Matra, Deden Derajat Ritonga, Arya Widura Natawijaya, Azis Poerwanto, Roedhy Sobir Widodo, Winarso Drajad Inoue, Eiichi |
author_sort | Matra, Deden Derajat |
collection | PubMed |
description | Nephelium lappaceum (Rambutan), is one of tropical fruit in which - cultivated widely in Indonesia and has good taste and aroma. However, the transcriptomic study of rambutan has limited. In this study, we performed transcriptome assembly using paired-end Illumina technology. The assembled transcriptome was constructed using Trinity and after filtering and removal sequences redundancy produced 36,303 contigs. The contig ranged 201–11,770 bp and N50 has 1327 bp. The contig was annotated with several databases such as SwissProt, TrEMBL, and nr/nt of NCBI databases. The raw reads are deposited in the DDBJ with DRA accession number, DRA007359: https://www.ncbi.nlm.nih.gov/sra/?term=DRA007359. The assembled contigs of transcriptome are deposited in the DDBJ TSA repository with accession number IADQ01000001–IADQ01036303: ftp://ftp.ddbj.nig.ac.jp/ddbj_database/tsa/IADQ.gz and also can be accessed at http://rujakbase.id. |
format | Online Article Text |
id | pubmed-6321968 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-63219682019-01-09 Dataset from de novo transcriptome assembly of Nephelium lappaceum aril Matra, Deden Derajat Ritonga, Arya Widura Natawijaya, Azis Poerwanto, Roedhy Sobir Widodo, Winarso Drajad Inoue, Eiichi Data Brief Agricultural and Biological Science Nephelium lappaceum (Rambutan), is one of tropical fruit in which - cultivated widely in Indonesia and has good taste and aroma. However, the transcriptomic study of rambutan has limited. In this study, we performed transcriptome assembly using paired-end Illumina technology. The assembled transcriptome was constructed using Trinity and after filtering and removal sequences redundancy produced 36,303 contigs. The contig ranged 201–11,770 bp and N50 has 1327 bp. The contig was annotated with several databases such as SwissProt, TrEMBL, and nr/nt of NCBI databases. The raw reads are deposited in the DDBJ with DRA accession number, DRA007359: https://www.ncbi.nlm.nih.gov/sra/?term=DRA007359. The assembled contigs of transcriptome are deposited in the DDBJ TSA repository with accession number IADQ01000001–IADQ01036303: ftp://ftp.ddbj.nig.ac.jp/ddbj_database/tsa/IADQ.gz and also can be accessed at http://rujakbase.id. Elsevier 2018-12-14 /pmc/articles/PMC6321968/ /pubmed/30627609 http://dx.doi.org/10.1016/j.dib.2018.12.034 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Agricultural and Biological Science Matra, Deden Derajat Ritonga, Arya Widura Natawijaya, Azis Poerwanto, Roedhy Sobir Widodo, Winarso Drajad Inoue, Eiichi Dataset from de novo transcriptome assembly of Nephelium lappaceum aril |
title | Dataset from de novo transcriptome assembly of Nephelium lappaceum aril |
title_full | Dataset from de novo transcriptome assembly of Nephelium lappaceum aril |
title_fullStr | Dataset from de novo transcriptome assembly of Nephelium lappaceum aril |
title_full_unstemmed | Dataset from de novo transcriptome assembly of Nephelium lappaceum aril |
title_short | Dataset from de novo transcriptome assembly of Nephelium lappaceum aril |
title_sort | dataset from de novo transcriptome assembly of nephelium lappaceum aril |
topic | Agricultural and Biological Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6321968/ https://www.ncbi.nlm.nih.gov/pubmed/30627609 http://dx.doi.org/10.1016/j.dib.2018.12.034 |
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