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Decoding the ocean's microbiological secrets for marine enzyme biodiscovery

A global census of marine microbial life has been underway over the past several decades. During this period, there have been scientific breakthroughs in estimating microbial diversity and understanding microbial functioning and ecology. It is estimated that the ocean, covering 71% of the earth'...

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Autores principales: Ferrer, Manuel, Méndez-García, Celia, Bargiela, Rafael, Chow, Jennifer, Alonso, Sandra, García-Moyano, Antonio, Bjerga, Gro E K, Steen, Ida H, Schwabe, Tatjana, Blom, Charlotte, Vester, Jan, Weckbecker, Andrea, Shahgaldian, Patrick, de Carvalho, Carla C C R, Meskys, Rolandas, Zanaroli, Giulio, Glöckner, Frank O, Fernández-Guerra, Antonio, Thambisetty, Siva, de la Calle, Fernando, Golyshina, Olga V, Yakimov, Michail M, Jaeger, Karl-Erich, Yakunin, Alexander F, Streit, Wolfgang R, McMeel, Oonagh, Calewaert, Jan-Bart, Tonné, Nathalie, Golyshin, Peter N
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6322442/
https://www.ncbi.nlm.nih.gov/pubmed/30534987
http://dx.doi.org/10.1093/femsle/fny285
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author Ferrer, Manuel
Méndez-García, Celia
Bargiela, Rafael
Chow, Jennifer
Alonso, Sandra
García-Moyano, Antonio
Bjerga, Gro E K
Steen, Ida H
Schwabe, Tatjana
Blom, Charlotte
Vester, Jan
Weckbecker, Andrea
Shahgaldian, Patrick
de Carvalho, Carla C C R
Meskys, Rolandas
Zanaroli, Giulio
Glöckner, Frank O
Fernández-Guerra, Antonio
Thambisetty, Siva
de la Calle, Fernando
Golyshina, Olga V
Yakimov, Michail M
Jaeger, Karl-Erich
Yakunin, Alexander F
Streit, Wolfgang R
McMeel, Oonagh
Calewaert, Jan-Bart
Tonné, Nathalie
Golyshin, Peter N
author_facet Ferrer, Manuel
Méndez-García, Celia
Bargiela, Rafael
Chow, Jennifer
Alonso, Sandra
García-Moyano, Antonio
Bjerga, Gro E K
Steen, Ida H
Schwabe, Tatjana
Blom, Charlotte
Vester, Jan
Weckbecker, Andrea
Shahgaldian, Patrick
de Carvalho, Carla C C R
Meskys, Rolandas
Zanaroli, Giulio
Glöckner, Frank O
Fernández-Guerra, Antonio
Thambisetty, Siva
de la Calle, Fernando
Golyshina, Olga V
Yakimov, Michail M
Jaeger, Karl-Erich
Yakunin, Alexander F
Streit, Wolfgang R
McMeel, Oonagh
Calewaert, Jan-Bart
Tonné, Nathalie
Golyshin, Peter N
author_sort Ferrer, Manuel
collection PubMed
description A global census of marine microbial life has been underway over the past several decades. During this period, there have been scientific breakthroughs in estimating microbial diversity and understanding microbial functioning and ecology. It is estimated that the ocean, covering 71% of the earth's surface with its estimated volume of about 2 × 10(18) m(3) and an average depth of 3800 m, hosts the largest population of microbes on Earth. More than 2 million eukaryotic and prokaryotic species are thought to thrive both in the ocean and on its surface. Prokaryotic cell abundances can reach densities of up to 10(12) cells per millilitre, exceeding eukaryotic densities of around 10(6) cells per millilitre of seawater. Besides their large numbers and abundance, marine microbial assemblages and their organic catalysts (enzymes) have a largely underestimated value for their use in the development of industrial products and processes. In this perspective article, we identified critical gaps in knowledge and technology to fast-track this development. We provided a general overview of the presumptive microbial assemblages in oceans, and an estimation of what is known and the enzymes that have been currently retrieved. We also discussed recent advances made in this area by the collaborative European Horizon 2020 project ‘INMARE’.
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spelling pubmed-63224422019-01-10 Decoding the ocean's microbiological secrets for marine enzyme biodiscovery Ferrer, Manuel Méndez-García, Celia Bargiela, Rafael Chow, Jennifer Alonso, Sandra García-Moyano, Antonio Bjerga, Gro E K Steen, Ida H Schwabe, Tatjana Blom, Charlotte Vester, Jan Weckbecker, Andrea Shahgaldian, Patrick de Carvalho, Carla C C R Meskys, Rolandas Zanaroli, Giulio Glöckner, Frank O Fernández-Guerra, Antonio Thambisetty, Siva de la Calle, Fernando Golyshina, Olga V Yakimov, Michail M Jaeger, Karl-Erich Yakunin, Alexander F Streit, Wolfgang R McMeel, Oonagh Calewaert, Jan-Bart Tonné, Nathalie Golyshin, Peter N FEMS Microbiol Lett Perspective A global census of marine microbial life has been underway over the past several decades. During this period, there have been scientific breakthroughs in estimating microbial diversity and understanding microbial functioning and ecology. It is estimated that the ocean, covering 71% of the earth's surface with its estimated volume of about 2 × 10(18) m(3) and an average depth of 3800 m, hosts the largest population of microbes on Earth. More than 2 million eukaryotic and prokaryotic species are thought to thrive both in the ocean and on its surface. Prokaryotic cell abundances can reach densities of up to 10(12) cells per millilitre, exceeding eukaryotic densities of around 10(6) cells per millilitre of seawater. Besides their large numbers and abundance, marine microbial assemblages and their organic catalysts (enzymes) have a largely underestimated value for their use in the development of industrial products and processes. In this perspective article, we identified critical gaps in knowledge and technology to fast-track this development. We provided a general overview of the presumptive microbial assemblages in oceans, and an estimation of what is known and the enzymes that have been currently retrieved. We also discussed recent advances made in this area by the collaborative European Horizon 2020 project ‘INMARE’. Oxford University Press 2018-12-05 /pmc/articles/PMC6322442/ /pubmed/30534987 http://dx.doi.org/10.1093/femsle/fny285 Text en © FEMS 2018. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Perspective
Ferrer, Manuel
Méndez-García, Celia
Bargiela, Rafael
Chow, Jennifer
Alonso, Sandra
García-Moyano, Antonio
Bjerga, Gro E K
Steen, Ida H
Schwabe, Tatjana
Blom, Charlotte
Vester, Jan
Weckbecker, Andrea
Shahgaldian, Patrick
de Carvalho, Carla C C R
Meskys, Rolandas
Zanaroli, Giulio
Glöckner, Frank O
Fernández-Guerra, Antonio
Thambisetty, Siva
de la Calle, Fernando
Golyshina, Olga V
Yakimov, Michail M
Jaeger, Karl-Erich
Yakunin, Alexander F
Streit, Wolfgang R
McMeel, Oonagh
Calewaert, Jan-Bart
Tonné, Nathalie
Golyshin, Peter N
Decoding the ocean's microbiological secrets for marine enzyme biodiscovery
title Decoding the ocean's microbiological secrets for marine enzyme biodiscovery
title_full Decoding the ocean's microbiological secrets for marine enzyme biodiscovery
title_fullStr Decoding the ocean's microbiological secrets for marine enzyme biodiscovery
title_full_unstemmed Decoding the ocean's microbiological secrets for marine enzyme biodiscovery
title_short Decoding the ocean's microbiological secrets for marine enzyme biodiscovery
title_sort decoding the ocean's microbiological secrets for marine enzyme biodiscovery
topic Perspective
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6322442/
https://www.ncbi.nlm.nih.gov/pubmed/30534987
http://dx.doi.org/10.1093/femsle/fny285
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