Cargando…

The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection

The 2019 Nucleic Acids Research (NAR) Database Issue contains 168 papers spanning molecular biology. Among them, 64 are new and another 92 are updates describing resources that appeared in the Issue previously. The remaining 12 are updates on databases most recently published elsewhere. This Issue c...

Descripción completa

Detalles Bibliográficos
Autores principales: Rigden, Daniel J, Fernández, Xosé M
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323895/
https://www.ncbi.nlm.nih.gov/pubmed/30626175
http://dx.doi.org/10.1093/nar/gky1267
_version_ 1783385864048476160
author Rigden, Daniel J
Fernández, Xosé M
author_facet Rigden, Daniel J
Fernández, Xosé M
author_sort Rigden, Daniel J
collection PubMed
description The 2019 Nucleic Acids Research (NAR) Database Issue contains 168 papers spanning molecular biology. Among them, 64 are new and another 92 are updates describing resources that appeared in the Issue previously. The remaining 12 are updates on databases most recently published elsewhere. This Issue contains two Breakthrough articles, on the Virtual Metabolic Human (VMH) database which links human and gut microbiota metabolism with diet and disease, and Vibrism DB, a database of mouse brain anatomy and gene (co-)expression with sophisticated visualization and session sharing. Major returning nucleic acid databases include RNAcentral, miRBase and LncRNA2Target. Protein sequence databases include UniProtKB, InterPro and Pfam, while wwPDB and RCSB cover protein structure. STRING and KEGG update in the section on metabolism and pathways. Microbial genomes are covered by IMG/M and resources for human and model organism genomics include Ensembl, UCSC Genome Browser, GENCODE and Flybase. Genomic variation and disease are well-covered by GWAS Catalog, PopHumanScan, OMIM and COSMIC, CADD being another major newcomer. Major new proteomics resources reporting here include iProX and jPOSTdb. The entire database issue is freely available online on the NAR website (https://academic.oup.com/nar). The NAR online Molecular Biology Database Collection has been updated, reviewing 506 entries, adding 66 new resources and eliminating 147 discontinued URLs, bringing the current total to 1613 databases. It is available at http://www.oxfordjournals.org/nar/database/c.
format Online
Article
Text
id pubmed-6323895
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-63238952019-01-10 The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection Rigden, Daniel J Fernández, Xosé M Nucleic Acids Res Editorial The 2019 Nucleic Acids Research (NAR) Database Issue contains 168 papers spanning molecular biology. Among them, 64 are new and another 92 are updates describing resources that appeared in the Issue previously. The remaining 12 are updates on databases most recently published elsewhere. This Issue contains two Breakthrough articles, on the Virtual Metabolic Human (VMH) database which links human and gut microbiota metabolism with diet and disease, and Vibrism DB, a database of mouse brain anatomy and gene (co-)expression with sophisticated visualization and session sharing. Major returning nucleic acid databases include RNAcentral, miRBase and LncRNA2Target. Protein sequence databases include UniProtKB, InterPro and Pfam, while wwPDB and RCSB cover protein structure. STRING and KEGG update in the section on metabolism and pathways. Microbial genomes are covered by IMG/M and resources for human and model organism genomics include Ensembl, UCSC Genome Browser, GENCODE and Flybase. Genomic variation and disease are well-covered by GWAS Catalog, PopHumanScan, OMIM and COSMIC, CADD being another major newcomer. Major new proteomics resources reporting here include iProX and jPOSTdb. The entire database issue is freely available online on the NAR website (https://academic.oup.com/nar). The NAR online Molecular Biology Database Collection has been updated, reviewing 506 entries, adding 66 new resources and eliminating 147 discontinued URLs, bringing the current total to 1613 databases. It is available at http://www.oxfordjournals.org/nar/database/c. Oxford University Press 2019-01-08 2018-12-29 /pmc/articles/PMC6323895/ /pubmed/30626175 http://dx.doi.org/10.1093/nar/gky1267 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Editorial
Rigden, Daniel J
Fernández, Xosé M
The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection
title The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection
title_full The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection
title_fullStr The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection
title_full_unstemmed The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection
title_short The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection
title_sort 26th annual nucleic acids research database issue and molecular biology database collection
topic Editorial
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323895/
https://www.ncbi.nlm.nih.gov/pubmed/30626175
http://dx.doi.org/10.1093/nar/gky1267
work_keys_str_mv AT rigdendanielj the26thannualnucleicacidsresearchdatabaseissueandmolecularbiologydatabasecollection
AT fernandezxosem the26thannualnucleicacidsresearchdatabaseissueandmolecularbiologydatabasecollection
AT rigdendanielj 26thannualnucleicacidsresearchdatabaseissueandmolecularbiologydatabasecollection
AT fernandezxosem 26thannualnucleicacidsresearchdatabaseissueandmolecularbiologydatabasecollection