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HmtVar: a new resource for human mitochondrial variations and pathogenicity data

Interest in human mitochondrial genetic data is constantly increasing among both clinicians and researchers, due to the involvement of mitochondrial DNA (mtDNA) in a number of physiological and pathological processes. Thanks to new sequencing technologies and modern databases, the large amount of in...

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Autores principales: Preste, Roberto, Vitale, Ornella, Clima, Rosanna, Gasparre, Giuseppe, Attimonelli, Marcella
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323908/
https://www.ncbi.nlm.nih.gov/pubmed/30371888
http://dx.doi.org/10.1093/nar/gky1024
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author Preste, Roberto
Vitale, Ornella
Clima, Rosanna
Gasparre, Giuseppe
Attimonelli, Marcella
author_facet Preste, Roberto
Vitale, Ornella
Clima, Rosanna
Gasparre, Giuseppe
Attimonelli, Marcella
author_sort Preste, Roberto
collection PubMed
description Interest in human mitochondrial genetic data is constantly increasing among both clinicians and researchers, due to the involvement of mitochondrial DNA (mtDNA) in a number of physiological and pathological processes. Thanks to new sequencing technologies and modern databases, the large amount of information on mtDNA variability may be exploited to gain insights into the relationship between mtDNA variants, phenotypes and diseases. To facilitate this process, we have developed the HmtVar resource, a variant-focused database that allows the exploration of a dataset of over 40 000 human mitochondrial variants. Mitochondrial variation data, initially gathered from the HmtDB platform, are integrated with in-house pathogenicity assessments based on various evaluation criteria and with a set of additional annotations from third-party resources. The result is a comprehensive collection of information of crucial importance for human mitochondrial variation studies and investigation of common and rare diseases in which the mitochondrion may be involved. HmtVar is accessible at https://www.hmtvar.uniba.it and data may be retrieved using either a web interface through the Query page or a state-of-the-art API for programmatic access.
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spelling pubmed-63239082019-01-10 HmtVar: a new resource for human mitochondrial variations and pathogenicity data Preste, Roberto Vitale, Ornella Clima, Rosanna Gasparre, Giuseppe Attimonelli, Marcella Nucleic Acids Res Database Issue Interest in human mitochondrial genetic data is constantly increasing among both clinicians and researchers, due to the involvement of mitochondrial DNA (mtDNA) in a number of physiological and pathological processes. Thanks to new sequencing technologies and modern databases, the large amount of information on mtDNA variability may be exploited to gain insights into the relationship between mtDNA variants, phenotypes and diseases. To facilitate this process, we have developed the HmtVar resource, a variant-focused database that allows the exploration of a dataset of over 40 000 human mitochondrial variants. Mitochondrial variation data, initially gathered from the HmtDB platform, are integrated with in-house pathogenicity assessments based on various evaluation criteria and with a set of additional annotations from third-party resources. The result is a comprehensive collection of information of crucial importance for human mitochondrial variation studies and investigation of common and rare diseases in which the mitochondrion may be involved. HmtVar is accessible at https://www.hmtvar.uniba.it and data may be retrieved using either a web interface through the Query page or a state-of-the-art API for programmatic access. Oxford University Press 2019-01-08 2018-10-29 /pmc/articles/PMC6323908/ /pubmed/30371888 http://dx.doi.org/10.1093/nar/gky1024 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Preste, Roberto
Vitale, Ornella
Clima, Rosanna
Gasparre, Giuseppe
Attimonelli, Marcella
HmtVar: a new resource for human mitochondrial variations and pathogenicity data
title HmtVar: a new resource for human mitochondrial variations and pathogenicity data
title_full HmtVar: a new resource for human mitochondrial variations and pathogenicity data
title_fullStr HmtVar: a new resource for human mitochondrial variations and pathogenicity data
title_full_unstemmed HmtVar: a new resource for human mitochondrial variations and pathogenicity data
title_short HmtVar: a new resource for human mitochondrial variations and pathogenicity data
title_sort hmtvar: a new resource for human mitochondrial variations and pathogenicity data
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323908/
https://www.ncbi.nlm.nih.gov/pubmed/30371888
http://dx.doi.org/10.1093/nar/gky1024
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