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Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update)

Glycosciences.DB, the glycan structure database of the Glycosciences.de portal, collects various kinds of data on glycan structures, including carbohydrate moieties from worldwide Protein Data Bank (wwPDB) structures. This way it forms a bridge between glycomics and proteomics resources. A major upd...

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Detalles Bibliográficos
Autores principales: Böhm, Michael, Bohne-Lang, Andreas, Frank, Martin, Loss, Alexander, Rojas-Macias, Miguel A, Lütteke, Thomas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323918/
https://www.ncbi.nlm.nih.gov/pubmed/30357361
http://dx.doi.org/10.1093/nar/gky994
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author Böhm, Michael
Bohne-Lang, Andreas
Frank, Martin
Loss, Alexander
Rojas-Macias, Miguel A
Lütteke, Thomas
author_facet Böhm, Michael
Bohne-Lang, Andreas
Frank, Martin
Loss, Alexander
Rojas-Macias, Miguel A
Lütteke, Thomas
author_sort Böhm, Michael
collection PubMed
description Glycosciences.DB, the glycan structure database of the Glycosciences.de portal, collects various kinds of data on glycan structures, including carbohydrate moieties from worldwide Protein Data Bank (wwPDB) structures. This way it forms a bridge between glycomics and proteomics resources. A major update of this database combines a redesigned web interface with a series of new functions. These include separate entry pages not only for glycan structures but also for literature references and wwPDB entries, improved substructure search options, a newly available keyword search covering all types of entries in one query, and new types of information that is added to glycan structures. These new features are described in detail in this article, and options how users can provide information to the database are discussed as well. Glycosciences.DB is available at http://www.glycosciences.de/database/ and can be freely accessed.
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spelling pubmed-63239182019-01-10 Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update) Böhm, Michael Bohne-Lang, Andreas Frank, Martin Loss, Alexander Rojas-Macias, Miguel A Lütteke, Thomas Nucleic Acids Res Database Issue Glycosciences.DB, the glycan structure database of the Glycosciences.de portal, collects various kinds of data on glycan structures, including carbohydrate moieties from worldwide Protein Data Bank (wwPDB) structures. This way it forms a bridge between glycomics and proteomics resources. A major update of this database combines a redesigned web interface with a series of new functions. These include separate entry pages not only for glycan structures but also for literature references and wwPDB entries, improved substructure search options, a newly available keyword search covering all types of entries in one query, and new types of information that is added to glycan structures. These new features are described in detail in this article, and options how users can provide information to the database are discussed as well. Glycosciences.DB is available at http://www.glycosciences.de/database/ and can be freely accessed. Oxford University Press 2019-01-08 2018-10-24 /pmc/articles/PMC6323918/ /pubmed/30357361 http://dx.doi.org/10.1093/nar/gky994 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Böhm, Michael
Bohne-Lang, Andreas
Frank, Martin
Loss, Alexander
Rojas-Macias, Miguel A
Lütteke, Thomas
Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update)
title Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update)
title_full Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update)
title_fullStr Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update)
title_full_unstemmed Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update)
title_short Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update)
title_sort glycosciences.db: an annotated data collection linking glycomics and proteomics data (2018 update)
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323918/
https://www.ncbi.nlm.nih.gov/pubmed/30357361
http://dx.doi.org/10.1093/nar/gky994
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