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The UCSC Genome Browser database: 2019 update

The UCSC Genome Browser (https://genome.ucsc.edu) is a graphical viewer for exploring genome annotations. For almost two decades, the Browser has provided visualization tools for genetics and molecular biology and continues to add new data and features. This year, we added a new tool that lets users...

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Autores principales: Haeussler, Maximilian, Zweig, Ann S, Tyner, Cath, Speir, Matthew L, Rosenbloom, Kate R, Raney, Brian J, Lee, Christopher M, Lee, Brian T, Hinrichs, Angie S, Gonzalez, Jairo Navarro, Gibson, David, Diekhans, Mark, Clawson, Hiram, Casper, Jonathan, Barber, Galt P, Haussler, David, Kuhn, Robert M, Kent, W James
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323953/
https://www.ncbi.nlm.nih.gov/pubmed/30407534
http://dx.doi.org/10.1093/nar/gky1095
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author Haeussler, Maximilian
Zweig, Ann S
Tyner, Cath
Speir, Matthew L
Rosenbloom, Kate R
Raney, Brian J
Lee, Christopher M
Lee, Brian T
Hinrichs, Angie S
Gonzalez, Jairo Navarro
Gibson, David
Diekhans, Mark
Clawson, Hiram
Casper, Jonathan
Barber, Galt P
Haussler, David
Kuhn, Robert M
Kent, W James
author_facet Haeussler, Maximilian
Zweig, Ann S
Tyner, Cath
Speir, Matthew L
Rosenbloom, Kate R
Raney, Brian J
Lee, Christopher M
Lee, Brian T
Hinrichs, Angie S
Gonzalez, Jairo Navarro
Gibson, David
Diekhans, Mark
Clawson, Hiram
Casper, Jonathan
Barber, Galt P
Haussler, David
Kuhn, Robert M
Kent, W James
author_sort Haeussler, Maximilian
collection PubMed
description The UCSC Genome Browser (https://genome.ucsc.edu) is a graphical viewer for exploring genome annotations. For almost two decades, the Browser has provided visualization tools for genetics and molecular biology and continues to add new data and features. This year, we added a new tool that lets users interactively arrange existing graphing tracks into new groups. Other software additions include new formats for chromosome interactions, a ChIP-Seq peak display for track hubs and improved support for HGVS. On the annotation side, we have added gnomAD, TCGA expression, RefSeq Functional elements, GTEx eQTLs, CRISPR Guides, SNPpedia and created a 30-way primate alignment on the human genome. Nine assemblies now have RefSeq-mapped gene models.
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spelling pubmed-63239532019-01-10 The UCSC Genome Browser database: 2019 update Haeussler, Maximilian Zweig, Ann S Tyner, Cath Speir, Matthew L Rosenbloom, Kate R Raney, Brian J Lee, Christopher M Lee, Brian T Hinrichs, Angie S Gonzalez, Jairo Navarro Gibson, David Diekhans, Mark Clawson, Hiram Casper, Jonathan Barber, Galt P Haussler, David Kuhn, Robert M Kent, W James Nucleic Acids Res Database Issue The UCSC Genome Browser (https://genome.ucsc.edu) is a graphical viewer for exploring genome annotations. For almost two decades, the Browser has provided visualization tools for genetics and molecular biology and continues to add new data and features. This year, we added a new tool that lets users interactively arrange existing graphing tracks into new groups. Other software additions include new formats for chromosome interactions, a ChIP-Seq peak display for track hubs and improved support for HGVS. On the annotation side, we have added gnomAD, TCGA expression, RefSeq Functional elements, GTEx eQTLs, CRISPR Guides, SNPpedia and created a 30-way primate alignment on the human genome. Nine assemblies now have RefSeq-mapped gene models. Oxford University Press 2019-01-08 2018-11-08 /pmc/articles/PMC6323953/ /pubmed/30407534 http://dx.doi.org/10.1093/nar/gky1095 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Haeussler, Maximilian
Zweig, Ann S
Tyner, Cath
Speir, Matthew L
Rosenbloom, Kate R
Raney, Brian J
Lee, Christopher M
Lee, Brian T
Hinrichs, Angie S
Gonzalez, Jairo Navarro
Gibson, David
Diekhans, Mark
Clawson, Hiram
Casper, Jonathan
Barber, Galt P
Haussler, David
Kuhn, Robert M
Kent, W James
The UCSC Genome Browser database: 2019 update
title The UCSC Genome Browser database: 2019 update
title_full The UCSC Genome Browser database: 2019 update
title_fullStr The UCSC Genome Browser database: 2019 update
title_full_unstemmed The UCSC Genome Browser database: 2019 update
title_short The UCSC Genome Browser database: 2019 update
title_sort ucsc genome browser database: 2019 update
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323953/
https://www.ncbi.nlm.nih.gov/pubmed/30407534
http://dx.doi.org/10.1093/nar/gky1095
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