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The UCSC Genome Browser database: 2019 update
The UCSC Genome Browser (https://genome.ucsc.edu) is a graphical viewer for exploring genome annotations. For almost two decades, the Browser has provided visualization tools for genetics and molecular biology and continues to add new data and features. This year, we added a new tool that lets users...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323953/ https://www.ncbi.nlm.nih.gov/pubmed/30407534 http://dx.doi.org/10.1093/nar/gky1095 |
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author | Haeussler, Maximilian Zweig, Ann S Tyner, Cath Speir, Matthew L Rosenbloom, Kate R Raney, Brian J Lee, Christopher M Lee, Brian T Hinrichs, Angie S Gonzalez, Jairo Navarro Gibson, David Diekhans, Mark Clawson, Hiram Casper, Jonathan Barber, Galt P Haussler, David Kuhn, Robert M Kent, W James |
author_facet | Haeussler, Maximilian Zweig, Ann S Tyner, Cath Speir, Matthew L Rosenbloom, Kate R Raney, Brian J Lee, Christopher M Lee, Brian T Hinrichs, Angie S Gonzalez, Jairo Navarro Gibson, David Diekhans, Mark Clawson, Hiram Casper, Jonathan Barber, Galt P Haussler, David Kuhn, Robert M Kent, W James |
author_sort | Haeussler, Maximilian |
collection | PubMed |
description | The UCSC Genome Browser (https://genome.ucsc.edu) is a graphical viewer for exploring genome annotations. For almost two decades, the Browser has provided visualization tools for genetics and molecular biology and continues to add new data and features. This year, we added a new tool that lets users interactively arrange existing graphing tracks into new groups. Other software additions include new formats for chromosome interactions, a ChIP-Seq peak display for track hubs and improved support for HGVS. On the annotation side, we have added gnomAD, TCGA expression, RefSeq Functional elements, GTEx eQTLs, CRISPR Guides, SNPpedia and created a 30-way primate alignment on the human genome. Nine assemblies now have RefSeq-mapped gene models. |
format | Online Article Text |
id | pubmed-6323953 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-63239532019-01-10 The UCSC Genome Browser database: 2019 update Haeussler, Maximilian Zweig, Ann S Tyner, Cath Speir, Matthew L Rosenbloom, Kate R Raney, Brian J Lee, Christopher M Lee, Brian T Hinrichs, Angie S Gonzalez, Jairo Navarro Gibson, David Diekhans, Mark Clawson, Hiram Casper, Jonathan Barber, Galt P Haussler, David Kuhn, Robert M Kent, W James Nucleic Acids Res Database Issue The UCSC Genome Browser (https://genome.ucsc.edu) is a graphical viewer for exploring genome annotations. For almost two decades, the Browser has provided visualization tools for genetics and molecular biology and continues to add new data and features. This year, we added a new tool that lets users interactively arrange existing graphing tracks into new groups. Other software additions include new formats for chromosome interactions, a ChIP-Seq peak display for track hubs and improved support for HGVS. On the annotation side, we have added gnomAD, TCGA expression, RefSeq Functional elements, GTEx eQTLs, CRISPR Guides, SNPpedia and created a 30-way primate alignment on the human genome. Nine assemblies now have RefSeq-mapped gene models. Oxford University Press 2019-01-08 2018-11-08 /pmc/articles/PMC6323953/ /pubmed/30407534 http://dx.doi.org/10.1093/nar/gky1095 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Haeussler, Maximilian Zweig, Ann S Tyner, Cath Speir, Matthew L Rosenbloom, Kate R Raney, Brian J Lee, Christopher M Lee, Brian T Hinrichs, Angie S Gonzalez, Jairo Navarro Gibson, David Diekhans, Mark Clawson, Hiram Casper, Jonathan Barber, Galt P Haussler, David Kuhn, Robert M Kent, W James The UCSC Genome Browser database: 2019 update |
title | The UCSC Genome Browser database: 2019 update |
title_full | The UCSC Genome Browser database: 2019 update |
title_fullStr | The UCSC Genome Browser database: 2019 update |
title_full_unstemmed | The UCSC Genome Browser database: 2019 update |
title_short | The UCSC Genome Browser database: 2019 update |
title_sort | ucsc genome browser database: 2019 update |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323953/ https://www.ncbi.nlm.nih.gov/pubmed/30407534 http://dx.doi.org/10.1093/nar/gky1095 |
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