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ECO, the Evidence & Conclusion Ontology: community standard for evidence information

The Evidence and Conclusion Ontology (ECO) contains terms (classes) that describe types of evidence and assertion methods. ECO terms are used in the process of biocuration to capture the evidence that supports biological assertions (e.g. gene product X has function Y as supported by evidence Z). Cap...

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Autores principales: Giglio, Michelle, Tauber, Rebecca, Nadendla, Suvarna, Munro, James, Olley, Dustin, Ball, Shoshannah, Mitraka, Elvira, Schriml, Lynn M, Gaudet, Pascale, Hobbs, Elizabeth T, Erill, Ivan, Siegele, Deborah A, Hu, James C, Mungall, Chris, Chibucos, Marcus C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323956/
https://www.ncbi.nlm.nih.gov/pubmed/30407590
http://dx.doi.org/10.1093/nar/gky1036
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author Giglio, Michelle
Tauber, Rebecca
Nadendla, Suvarna
Munro, James
Olley, Dustin
Ball, Shoshannah
Mitraka, Elvira
Schriml, Lynn M
Gaudet, Pascale
Hobbs, Elizabeth T
Erill, Ivan
Siegele, Deborah A
Hu, James C
Mungall, Chris
Chibucos, Marcus C
author_facet Giglio, Michelle
Tauber, Rebecca
Nadendla, Suvarna
Munro, James
Olley, Dustin
Ball, Shoshannah
Mitraka, Elvira
Schriml, Lynn M
Gaudet, Pascale
Hobbs, Elizabeth T
Erill, Ivan
Siegele, Deborah A
Hu, James C
Mungall, Chris
Chibucos, Marcus C
author_sort Giglio, Michelle
collection PubMed
description The Evidence and Conclusion Ontology (ECO) contains terms (classes) that describe types of evidence and assertion methods. ECO terms are used in the process of biocuration to capture the evidence that supports biological assertions (e.g. gene product X has function Y as supported by evidence Z). Capture of this information allows tracking of annotation provenance, establishment of quality control measures and query of evidence. ECO contains over 1500 terms and is in use by many leading biological resources including the Gene Ontology, UniProt and several model organism databases. ECO is continually being expanded and revised based on the needs of the biocuration community. The ontology is freely available for download from GitHub (https://github.com/evidenceontology/) or the project’s website (http://evidenceontology.org/). Users can request new terms or changes to existing terms through the project’s GitHub site. ECO is released into the public domain under CC0 1.0 Universal.
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spelling pubmed-63239562019-01-10 ECO, the Evidence & Conclusion Ontology: community standard for evidence information Giglio, Michelle Tauber, Rebecca Nadendla, Suvarna Munro, James Olley, Dustin Ball, Shoshannah Mitraka, Elvira Schriml, Lynn M Gaudet, Pascale Hobbs, Elizabeth T Erill, Ivan Siegele, Deborah A Hu, James C Mungall, Chris Chibucos, Marcus C Nucleic Acids Res Database Issue The Evidence and Conclusion Ontology (ECO) contains terms (classes) that describe types of evidence and assertion methods. ECO terms are used in the process of biocuration to capture the evidence that supports biological assertions (e.g. gene product X has function Y as supported by evidence Z). Capture of this information allows tracking of annotation provenance, establishment of quality control measures and query of evidence. ECO contains over 1500 terms and is in use by many leading biological resources including the Gene Ontology, UniProt and several model organism databases. ECO is continually being expanded and revised based on the needs of the biocuration community. The ontology is freely available for download from GitHub (https://github.com/evidenceontology/) or the project’s website (http://evidenceontology.org/). Users can request new terms or changes to existing terms through the project’s GitHub site. ECO is released into the public domain under CC0 1.0 Universal. Oxford University Press 2019-01-08 2018-11-08 /pmc/articles/PMC6323956/ /pubmed/30407590 http://dx.doi.org/10.1093/nar/gky1036 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Giglio, Michelle
Tauber, Rebecca
Nadendla, Suvarna
Munro, James
Olley, Dustin
Ball, Shoshannah
Mitraka, Elvira
Schriml, Lynn M
Gaudet, Pascale
Hobbs, Elizabeth T
Erill, Ivan
Siegele, Deborah A
Hu, James C
Mungall, Chris
Chibucos, Marcus C
ECO, the Evidence & Conclusion Ontology: community standard for evidence information
title ECO, the Evidence & Conclusion Ontology: community standard for evidence information
title_full ECO, the Evidence & Conclusion Ontology: community standard for evidence information
title_fullStr ECO, the Evidence & Conclusion Ontology: community standard for evidence information
title_full_unstemmed ECO, the Evidence & Conclusion Ontology: community standard for evidence information
title_short ECO, the Evidence & Conclusion Ontology: community standard for evidence information
title_sort eco, the evidence & conclusion ontology: community standard for evidence information
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323956/
https://www.ncbi.nlm.nih.gov/pubmed/30407590
http://dx.doi.org/10.1093/nar/gky1036
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