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ECO, the Evidence & Conclusion Ontology: community standard for evidence information
The Evidence and Conclusion Ontology (ECO) contains terms (classes) that describe types of evidence and assertion methods. ECO terms are used in the process of biocuration to capture the evidence that supports biological assertions (e.g. gene product X has function Y as supported by evidence Z). Cap...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323956/ https://www.ncbi.nlm.nih.gov/pubmed/30407590 http://dx.doi.org/10.1093/nar/gky1036 |
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author | Giglio, Michelle Tauber, Rebecca Nadendla, Suvarna Munro, James Olley, Dustin Ball, Shoshannah Mitraka, Elvira Schriml, Lynn M Gaudet, Pascale Hobbs, Elizabeth T Erill, Ivan Siegele, Deborah A Hu, James C Mungall, Chris Chibucos, Marcus C |
author_facet | Giglio, Michelle Tauber, Rebecca Nadendla, Suvarna Munro, James Olley, Dustin Ball, Shoshannah Mitraka, Elvira Schriml, Lynn M Gaudet, Pascale Hobbs, Elizabeth T Erill, Ivan Siegele, Deborah A Hu, James C Mungall, Chris Chibucos, Marcus C |
author_sort | Giglio, Michelle |
collection | PubMed |
description | The Evidence and Conclusion Ontology (ECO) contains terms (classes) that describe types of evidence and assertion methods. ECO terms are used in the process of biocuration to capture the evidence that supports biological assertions (e.g. gene product X has function Y as supported by evidence Z). Capture of this information allows tracking of annotation provenance, establishment of quality control measures and query of evidence. ECO contains over 1500 terms and is in use by many leading biological resources including the Gene Ontology, UniProt and several model organism databases. ECO is continually being expanded and revised based on the needs of the biocuration community. The ontology is freely available for download from GitHub (https://github.com/evidenceontology/) or the project’s website (http://evidenceontology.org/). Users can request new terms or changes to existing terms through the project’s GitHub site. ECO is released into the public domain under CC0 1.0 Universal. |
format | Online Article Text |
id | pubmed-6323956 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-63239562019-01-10 ECO, the Evidence & Conclusion Ontology: community standard for evidence information Giglio, Michelle Tauber, Rebecca Nadendla, Suvarna Munro, James Olley, Dustin Ball, Shoshannah Mitraka, Elvira Schriml, Lynn M Gaudet, Pascale Hobbs, Elizabeth T Erill, Ivan Siegele, Deborah A Hu, James C Mungall, Chris Chibucos, Marcus C Nucleic Acids Res Database Issue The Evidence and Conclusion Ontology (ECO) contains terms (classes) that describe types of evidence and assertion methods. ECO terms are used in the process of biocuration to capture the evidence that supports biological assertions (e.g. gene product X has function Y as supported by evidence Z). Capture of this information allows tracking of annotation provenance, establishment of quality control measures and query of evidence. ECO contains over 1500 terms and is in use by many leading biological resources including the Gene Ontology, UniProt and several model organism databases. ECO is continually being expanded and revised based on the needs of the biocuration community. The ontology is freely available for download from GitHub (https://github.com/evidenceontology/) or the project’s website (http://evidenceontology.org/). Users can request new terms or changes to existing terms through the project’s GitHub site. ECO is released into the public domain under CC0 1.0 Universal. Oxford University Press 2019-01-08 2018-11-08 /pmc/articles/PMC6323956/ /pubmed/30407590 http://dx.doi.org/10.1093/nar/gky1036 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Giglio, Michelle Tauber, Rebecca Nadendla, Suvarna Munro, James Olley, Dustin Ball, Shoshannah Mitraka, Elvira Schriml, Lynn M Gaudet, Pascale Hobbs, Elizabeth T Erill, Ivan Siegele, Deborah A Hu, James C Mungall, Chris Chibucos, Marcus C ECO, the Evidence & Conclusion Ontology: community standard for evidence information |
title | ECO, the Evidence & Conclusion Ontology: community standard for evidence information |
title_full | ECO, the Evidence & Conclusion Ontology: community standard for evidence information |
title_fullStr | ECO, the Evidence & Conclusion Ontology: community standard for evidence information |
title_full_unstemmed | ECO, the Evidence & Conclusion Ontology: community standard for evidence information |
title_short | ECO, the Evidence & Conclusion Ontology: community standard for evidence information |
title_sort | eco, the evidence & conclusion ontology: community standard for evidence information |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323956/ https://www.ncbi.nlm.nih.gov/pubmed/30407590 http://dx.doi.org/10.1093/nar/gky1036 |
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