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Genomes OnLine database (GOLD) v.7: updates and new features
The Genomes Online Database (GOLD) (https://gold.jgi.doe.gov) is an open online resource, which maintains an up-to-date catalog of genome and metagenome projects in the context of a comprehensive list of associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organis...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323969/ https://www.ncbi.nlm.nih.gov/pubmed/30357420 http://dx.doi.org/10.1093/nar/gky977 |
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author | Mukherjee, Supratim Stamatis, Dimitri Bertsch, Jon Ovchinnikova, Galina Katta, Hema Y Mojica, Alejandro Chen, I-Min A Kyrpides, Nikos C Reddy, TBK |
author_facet | Mukherjee, Supratim Stamatis, Dimitri Bertsch, Jon Ovchinnikova, Galina Katta, Hema Y Mojica, Alejandro Chen, I-Min A Kyrpides, Nikos C Reddy, TBK |
author_sort | Mukherjee, Supratim |
collection | PubMed |
description | The Genomes Online Database (GOLD) (https://gold.jgi.doe.gov) is an open online resource, which maintains an up-to-date catalog of genome and metagenome projects in the context of a comprehensive list of associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project. Currently GOLD hosts information on 33 415 Studies, 49 826 Biosamples, 313 324 Organisms, 215 881 Sequencing Projects and 174 454 Analysis Projects with a total of 541 metadata fields, of which 80 are based on controlled vocabulary (CV) terms. GOLD provides a user-friendly web interface to browse sequencing projects and launch advanced search tools across four classification levels. Users submit metadata on a wide range of Sequencing and Analysis Projects in GOLD before depositing sequence data to the Integrated Microbial Genomes (IMG) system for analysis. GOLD conforms with and supports the rules set by the Genomic Standards Consortium (GSC) Minimum Information standards. The current version of GOLD (v.7) has seen the number of projects and associated metadata increase exponentially over the years. This paper provides an update on the current status of GOLD and highlights the new features added over the last two years. |
format | Online Article Text |
id | pubmed-6323969 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-63239692019-01-10 Genomes OnLine database (GOLD) v.7: updates and new features Mukherjee, Supratim Stamatis, Dimitri Bertsch, Jon Ovchinnikova, Galina Katta, Hema Y Mojica, Alejandro Chen, I-Min A Kyrpides, Nikos C Reddy, TBK Nucleic Acids Res Database Issue The Genomes Online Database (GOLD) (https://gold.jgi.doe.gov) is an open online resource, which maintains an up-to-date catalog of genome and metagenome projects in the context of a comprehensive list of associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project. Currently GOLD hosts information on 33 415 Studies, 49 826 Biosamples, 313 324 Organisms, 215 881 Sequencing Projects and 174 454 Analysis Projects with a total of 541 metadata fields, of which 80 are based on controlled vocabulary (CV) terms. GOLD provides a user-friendly web interface to browse sequencing projects and launch advanced search tools across four classification levels. Users submit metadata on a wide range of Sequencing and Analysis Projects in GOLD before depositing sequence data to the Integrated Microbial Genomes (IMG) system for analysis. GOLD conforms with and supports the rules set by the Genomic Standards Consortium (GSC) Minimum Information standards. The current version of GOLD (v.7) has seen the number of projects and associated metadata increase exponentially over the years. This paper provides an update on the current status of GOLD and highlights the new features added over the last two years. Oxford University Press 2019-01-08 2018-10-24 /pmc/articles/PMC6323969/ /pubmed/30357420 http://dx.doi.org/10.1093/nar/gky977 Text en Published by Oxford University Press on behalf of Nucleic Acids Research 2018. This work is written by (a) US Government employee(s) and is in the public domain in the US. |
spellingShingle | Database Issue Mukherjee, Supratim Stamatis, Dimitri Bertsch, Jon Ovchinnikova, Galina Katta, Hema Y Mojica, Alejandro Chen, I-Min A Kyrpides, Nikos C Reddy, TBK Genomes OnLine database (GOLD) v.7: updates and new features |
title | Genomes OnLine database (GOLD) v.7: updates and new features |
title_full | Genomes OnLine database (GOLD) v.7: updates and new features |
title_fullStr | Genomes OnLine database (GOLD) v.7: updates and new features |
title_full_unstemmed | Genomes OnLine database (GOLD) v.7: updates and new features |
title_short | Genomes OnLine database (GOLD) v.7: updates and new features |
title_sort | genomes online database (gold) v.7: updates and new features |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323969/ https://www.ncbi.nlm.nih.gov/pubmed/30357420 http://dx.doi.org/10.1093/nar/gky977 |
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