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Genomes OnLine database (GOLD) v.7: updates and new features

The Genomes Online Database (GOLD) (https://gold.jgi.doe.gov) is an open online resource, which maintains an up-to-date catalog of genome and metagenome projects in the context of a comprehensive list of associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organis...

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Autores principales: Mukherjee, Supratim, Stamatis, Dimitri, Bertsch, Jon, Ovchinnikova, Galina, Katta, Hema Y, Mojica, Alejandro, Chen, I-Min A, Kyrpides, Nikos C, Reddy, TBK
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323969/
https://www.ncbi.nlm.nih.gov/pubmed/30357420
http://dx.doi.org/10.1093/nar/gky977
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author Mukherjee, Supratim
Stamatis, Dimitri
Bertsch, Jon
Ovchinnikova, Galina
Katta, Hema Y
Mojica, Alejandro
Chen, I-Min A
Kyrpides, Nikos C
Reddy, TBK
author_facet Mukherjee, Supratim
Stamatis, Dimitri
Bertsch, Jon
Ovchinnikova, Galina
Katta, Hema Y
Mojica, Alejandro
Chen, I-Min A
Kyrpides, Nikos C
Reddy, TBK
author_sort Mukherjee, Supratim
collection PubMed
description The Genomes Online Database (GOLD) (https://gold.jgi.doe.gov) is an open online resource, which maintains an up-to-date catalog of genome and metagenome projects in the context of a comprehensive list of associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project. Currently GOLD hosts information on 33 415 Studies, 49 826 Biosamples, 313 324 Organisms, 215 881 Sequencing Projects and 174 454 Analysis Projects with a total of 541 metadata fields, of which 80 are based on controlled vocabulary (CV) terms. GOLD provides a user-friendly web interface to browse sequencing projects and launch advanced search tools across four classification levels. Users submit metadata on a wide range of Sequencing and Analysis Projects in GOLD before depositing sequence data to the Integrated Microbial Genomes (IMG) system for analysis. GOLD conforms with and supports the rules set by the Genomic Standards Consortium (GSC) Minimum Information standards. The current version of GOLD (v.7) has seen the number of projects and associated metadata increase exponentially over the years. This paper provides an update on the current status of GOLD and highlights the new features added over the last two years.
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spelling pubmed-63239692019-01-10 Genomes OnLine database (GOLD) v.7: updates and new features Mukherjee, Supratim Stamatis, Dimitri Bertsch, Jon Ovchinnikova, Galina Katta, Hema Y Mojica, Alejandro Chen, I-Min A Kyrpides, Nikos C Reddy, TBK Nucleic Acids Res Database Issue The Genomes Online Database (GOLD) (https://gold.jgi.doe.gov) is an open online resource, which maintains an up-to-date catalog of genome and metagenome projects in the context of a comprehensive list of associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project. Currently GOLD hosts information on 33 415 Studies, 49 826 Biosamples, 313 324 Organisms, 215 881 Sequencing Projects and 174 454 Analysis Projects with a total of 541 metadata fields, of which 80 are based on controlled vocabulary (CV) terms. GOLD provides a user-friendly web interface to browse sequencing projects and launch advanced search tools across four classification levels. Users submit metadata on a wide range of Sequencing and Analysis Projects in GOLD before depositing sequence data to the Integrated Microbial Genomes (IMG) system for analysis. GOLD conforms with and supports the rules set by the Genomic Standards Consortium (GSC) Minimum Information standards. The current version of GOLD (v.7) has seen the number of projects and associated metadata increase exponentially over the years. This paper provides an update on the current status of GOLD and highlights the new features added over the last two years. Oxford University Press 2019-01-08 2018-10-24 /pmc/articles/PMC6323969/ /pubmed/30357420 http://dx.doi.org/10.1093/nar/gky977 Text en Published by Oxford University Press on behalf of Nucleic Acids Research 2018. This work is written by (a) US Government employee(s) and is in the public domain in the US.
spellingShingle Database Issue
Mukherjee, Supratim
Stamatis, Dimitri
Bertsch, Jon
Ovchinnikova, Galina
Katta, Hema Y
Mojica, Alejandro
Chen, I-Min A
Kyrpides, Nikos C
Reddy, TBK
Genomes OnLine database (GOLD) v.7: updates and new features
title Genomes OnLine database (GOLD) v.7: updates and new features
title_full Genomes OnLine database (GOLD) v.7: updates and new features
title_fullStr Genomes OnLine database (GOLD) v.7: updates and new features
title_full_unstemmed Genomes OnLine database (GOLD) v.7: updates and new features
title_short Genomes OnLine database (GOLD) v.7: updates and new features
title_sort genomes online database (gold) v.7: updates and new features
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323969/
https://www.ncbi.nlm.nih.gov/pubmed/30357420
http://dx.doi.org/10.1093/nar/gky977
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