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POSTAR2: deciphering the post-transcriptional regulatory logics
Post-transcriptional regulation of RNAs is critical to the diverse range of cellular processes. The volume of functional genomic data focusing on post-transcriptional regulation logics continues to grow in recent years. In the current database version, POSTAR2 (http://lulab.life.tsinghua.edu.cn/post...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323971/ https://www.ncbi.nlm.nih.gov/pubmed/30239819 http://dx.doi.org/10.1093/nar/gky830 |
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author | Zhu, Yumin Xu, Gang Yang, Yucheng T Xu, Zhiyu Chen, Xinduo Shi, Binbin Xie, Daoxin Lu, Zhi John Wang, Pengyuan |
author_facet | Zhu, Yumin Xu, Gang Yang, Yucheng T Xu, Zhiyu Chen, Xinduo Shi, Binbin Xie, Daoxin Lu, Zhi John Wang, Pengyuan |
author_sort | Zhu, Yumin |
collection | PubMed |
description | Post-transcriptional regulation of RNAs is critical to the diverse range of cellular processes. The volume of functional genomic data focusing on post-transcriptional regulation logics continues to grow in recent years. In the current database version, POSTAR2 (http://lulab.life.tsinghua.edu.cn/postar), we included the following new features and data: updated ∼500 CLIP-seq datasets (∼1200 CLIP-seq datasets in total) from six species, including human, mouse, fly, worm, Arabidopsis and yeast; added a new module ‘Translatome’, which is derived from Ribo-seq datasets and contains ∼36 million open reading frames (ORFs) in the genomes from the six species; updated and unified post-transcriptional regulation and variation data. Finally, we improved web interfaces for searching and visualizing protein–RNA interactions with multi-layer information. Meanwhile, we also merged our CLIPdb database into POSTAR2. POSTAR2 will help researchers investigate the post-transcriptional regulatory logics coordinated by RNA-binding proteins and translational landscape of cellular RNAs. |
format | Online Article Text |
id | pubmed-6323971 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-63239712019-01-10 POSTAR2: deciphering the post-transcriptional regulatory logics Zhu, Yumin Xu, Gang Yang, Yucheng T Xu, Zhiyu Chen, Xinduo Shi, Binbin Xie, Daoxin Lu, Zhi John Wang, Pengyuan Nucleic Acids Res Database Issue Post-transcriptional regulation of RNAs is critical to the diverse range of cellular processes. The volume of functional genomic data focusing on post-transcriptional regulation logics continues to grow in recent years. In the current database version, POSTAR2 (http://lulab.life.tsinghua.edu.cn/postar), we included the following new features and data: updated ∼500 CLIP-seq datasets (∼1200 CLIP-seq datasets in total) from six species, including human, mouse, fly, worm, Arabidopsis and yeast; added a new module ‘Translatome’, which is derived from Ribo-seq datasets and contains ∼36 million open reading frames (ORFs) in the genomes from the six species; updated and unified post-transcriptional regulation and variation data. Finally, we improved web interfaces for searching and visualizing protein–RNA interactions with multi-layer information. Meanwhile, we also merged our CLIPdb database into POSTAR2. POSTAR2 will help researchers investigate the post-transcriptional regulatory logics coordinated by RNA-binding proteins and translational landscape of cellular RNAs. Oxford University Press 2019-01-08 2018-09-17 /pmc/articles/PMC6323971/ /pubmed/30239819 http://dx.doi.org/10.1093/nar/gky830 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Database Issue Zhu, Yumin Xu, Gang Yang, Yucheng T Xu, Zhiyu Chen, Xinduo Shi, Binbin Xie, Daoxin Lu, Zhi John Wang, Pengyuan POSTAR2: deciphering the post-transcriptional regulatory logics |
title | POSTAR2: deciphering the post-transcriptional regulatory logics |
title_full | POSTAR2: deciphering the post-transcriptional regulatory logics |
title_fullStr | POSTAR2: deciphering the post-transcriptional regulatory logics |
title_full_unstemmed | POSTAR2: deciphering the post-transcriptional regulatory logics |
title_short | POSTAR2: deciphering the post-transcriptional regulatory logics |
title_sort | postar2: deciphering the post-transcriptional regulatory logics |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323971/ https://www.ncbi.nlm.nih.gov/pubmed/30239819 http://dx.doi.org/10.1093/nar/gky830 |
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