Cargando…

POSTAR2: deciphering the post-transcriptional regulatory logics

Post-transcriptional regulation of RNAs is critical to the diverse range of cellular processes. The volume of functional genomic data focusing on post-transcriptional regulation logics continues to grow in recent years. In the current database version, POSTAR2 (http://lulab.life.tsinghua.edu.cn/post...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhu, Yumin, Xu, Gang, Yang, Yucheng T, Xu, Zhiyu, Chen, Xinduo, Shi, Binbin, Xie, Daoxin, Lu, Zhi John, Wang, Pengyuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323971/
https://www.ncbi.nlm.nih.gov/pubmed/30239819
http://dx.doi.org/10.1093/nar/gky830
_version_ 1783385881832325120
author Zhu, Yumin
Xu, Gang
Yang, Yucheng T
Xu, Zhiyu
Chen, Xinduo
Shi, Binbin
Xie, Daoxin
Lu, Zhi John
Wang, Pengyuan
author_facet Zhu, Yumin
Xu, Gang
Yang, Yucheng T
Xu, Zhiyu
Chen, Xinduo
Shi, Binbin
Xie, Daoxin
Lu, Zhi John
Wang, Pengyuan
author_sort Zhu, Yumin
collection PubMed
description Post-transcriptional regulation of RNAs is critical to the diverse range of cellular processes. The volume of functional genomic data focusing on post-transcriptional regulation logics continues to grow in recent years. In the current database version, POSTAR2 (http://lulab.life.tsinghua.edu.cn/postar), we included the following new features and data: updated ∼500 CLIP-seq datasets (∼1200 CLIP-seq datasets in total) from six species, including human, mouse, fly, worm, Arabidopsis and yeast; added a new module ‘Translatome’, which is derived from Ribo-seq datasets and contains ∼36 million open reading frames (ORFs) in the genomes from the six species; updated and unified post-transcriptional regulation and variation data. Finally, we improved web interfaces for searching and visualizing protein–RNA interactions with multi-layer information. Meanwhile, we also merged our CLIPdb database into POSTAR2. POSTAR2 will help researchers investigate the post-transcriptional regulatory logics coordinated by RNA-binding proteins and translational landscape of cellular RNAs.
format Online
Article
Text
id pubmed-6323971
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-63239712019-01-10 POSTAR2: deciphering the post-transcriptional regulatory logics Zhu, Yumin Xu, Gang Yang, Yucheng T Xu, Zhiyu Chen, Xinduo Shi, Binbin Xie, Daoxin Lu, Zhi John Wang, Pengyuan Nucleic Acids Res Database Issue Post-transcriptional regulation of RNAs is critical to the diverse range of cellular processes. The volume of functional genomic data focusing on post-transcriptional regulation logics continues to grow in recent years. In the current database version, POSTAR2 (http://lulab.life.tsinghua.edu.cn/postar), we included the following new features and data: updated ∼500 CLIP-seq datasets (∼1200 CLIP-seq datasets in total) from six species, including human, mouse, fly, worm, Arabidopsis and yeast; added a new module ‘Translatome’, which is derived from Ribo-seq datasets and contains ∼36 million open reading frames (ORFs) in the genomes from the six species; updated and unified post-transcriptional regulation and variation data. Finally, we improved web interfaces for searching and visualizing protein–RNA interactions with multi-layer information. Meanwhile, we also merged our CLIPdb database into POSTAR2. POSTAR2 will help researchers investigate the post-transcriptional regulatory logics coordinated by RNA-binding proteins and translational landscape of cellular RNAs. Oxford University Press 2019-01-08 2018-09-17 /pmc/articles/PMC6323971/ /pubmed/30239819 http://dx.doi.org/10.1093/nar/gky830 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Zhu, Yumin
Xu, Gang
Yang, Yucheng T
Xu, Zhiyu
Chen, Xinduo
Shi, Binbin
Xie, Daoxin
Lu, Zhi John
Wang, Pengyuan
POSTAR2: deciphering the post-transcriptional regulatory logics
title POSTAR2: deciphering the post-transcriptional regulatory logics
title_full POSTAR2: deciphering the post-transcriptional regulatory logics
title_fullStr POSTAR2: deciphering the post-transcriptional regulatory logics
title_full_unstemmed POSTAR2: deciphering the post-transcriptional regulatory logics
title_short POSTAR2: deciphering the post-transcriptional regulatory logics
title_sort postar2: deciphering the post-transcriptional regulatory logics
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323971/
https://www.ncbi.nlm.nih.gov/pubmed/30239819
http://dx.doi.org/10.1093/nar/gky830
work_keys_str_mv AT zhuyumin postar2decipheringtheposttranscriptionalregulatorylogics
AT xugang postar2decipheringtheposttranscriptionalregulatorylogics
AT yangyuchengt postar2decipheringtheposttranscriptionalregulatorylogics
AT xuzhiyu postar2decipheringtheposttranscriptionalregulatorylogics
AT chenxinduo postar2decipheringtheposttranscriptionalregulatorylogics
AT shibinbin postar2decipheringtheposttranscriptionalregulatorylogics
AT xiedaoxin postar2decipheringtheposttranscriptionalregulatorylogics
AT luzhijohn postar2decipheringtheposttranscriptionalregulatorylogics
AT wangpengyuan postar2decipheringtheposttranscriptionalregulatorylogics