Cargando…

AmtDB: a database of ancient human mitochondrial genomes

Ancient mitochondrial DNA is used for tracing human past demographic events due to its population-level variability. The number of published ancient mitochondrial genomes has increased in recent years, alongside with the development of high-throughput sequencing and capture enrichment methods. Here,...

Descripción completa

Detalles Bibliográficos
Autores principales: Ehler, Edvard, Novotný, Jiří, Juras, Anna, Chyleński, Maciej, Moravčík, Ondřej, Pačes, Jan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324066/
https://www.ncbi.nlm.nih.gov/pubmed/30247677
http://dx.doi.org/10.1093/nar/gky843
_version_ 1783385903619637248
author Ehler, Edvard
Novotný, Jiří
Juras, Anna
Chyleński, Maciej
Moravčík, Ondřej
Pačes, Jan
author_facet Ehler, Edvard
Novotný, Jiří
Juras, Anna
Chyleński, Maciej
Moravčík, Ondřej
Pačes, Jan
author_sort Ehler, Edvard
collection PubMed
description Ancient mitochondrial DNA is used for tracing human past demographic events due to its population-level variability. The number of published ancient mitochondrial genomes has increased in recent years, alongside with the development of high-throughput sequencing and capture enrichment methods. Here, we present AmtDB, the first database of ancient human mitochondrial genomes. Release version contains 1107 hand-curated ancient samples, freely accessible for download, together with the individual descriptors, including geographic location, radiocarbon dating, and archaeological culture affiliation. The database also features an interactive map for sample location visualization. AmtDB is a key platform for ancient population genetic studies and is available at https://amtdb.org.
format Online
Article
Text
id pubmed-6324066
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-63240662019-01-10 AmtDB: a database of ancient human mitochondrial genomes Ehler, Edvard Novotný, Jiří Juras, Anna Chyleński, Maciej Moravčík, Ondřej Pačes, Jan Nucleic Acids Res Database Issue Ancient mitochondrial DNA is used for tracing human past demographic events due to its population-level variability. The number of published ancient mitochondrial genomes has increased in recent years, alongside with the development of high-throughput sequencing and capture enrichment methods. Here, we present AmtDB, the first database of ancient human mitochondrial genomes. Release version contains 1107 hand-curated ancient samples, freely accessible for download, together with the individual descriptors, including geographic location, radiocarbon dating, and archaeological culture affiliation. The database also features an interactive map for sample location visualization. AmtDB is a key platform for ancient population genetic studies and is available at https://amtdb.org. Oxford University Press 2019-01-08 2018-09-24 /pmc/articles/PMC6324066/ /pubmed/30247677 http://dx.doi.org/10.1093/nar/gky843 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Ehler, Edvard
Novotný, Jiří
Juras, Anna
Chyleński, Maciej
Moravčík, Ondřej
Pačes, Jan
AmtDB: a database of ancient human mitochondrial genomes
title AmtDB: a database of ancient human mitochondrial genomes
title_full AmtDB: a database of ancient human mitochondrial genomes
title_fullStr AmtDB: a database of ancient human mitochondrial genomes
title_full_unstemmed AmtDB: a database of ancient human mitochondrial genomes
title_short AmtDB: a database of ancient human mitochondrial genomes
title_sort amtdb: a database of ancient human mitochondrial genomes
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324066/
https://www.ncbi.nlm.nih.gov/pubmed/30247677
http://dx.doi.org/10.1093/nar/gky843
work_keys_str_mv AT ehleredvard amtdbadatabaseofancienthumanmitochondrialgenomes
AT novotnyjiri amtdbadatabaseofancienthumanmitochondrialgenomes
AT jurasanna amtdbadatabaseofancienthumanmitochondrialgenomes
AT chylenskimaciej amtdbadatabaseofancienthumanmitochondrialgenomes
AT moravcikondrej amtdbadatabaseofancienthumanmitochondrialgenomes
AT pacesjan amtdbadatabaseofancienthumanmitochondrialgenomes