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Open Targets Platform: new developments and updates two years on

The Open Targets Platform integrates evidence from genetics, genomics, transcriptomics, drugs, animal models and scientific literature to score and rank target-disease associations for drug target identification. The associations are displayed in an intuitive user interface (https://www.targetvalida...

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Autores principales: Carvalho-Silva, Denise, Pierleoni, Andrea, Pignatelli, Miguel, Ong, ChuangKee, Fumis, Luca, Karamanis, Nikiforos, Carmona, Miguel, Faulconbridge, Adam, Hercules, Andrew, McAuley, Elaine, Miranda, Alfredo, Peat, Gareth, Spitzer, Michaela, Barrett, Jeffrey, Hulcoop, David G, Papa, Eliseo, Koscielny, Gautier, Dunham, Ian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324073/
https://www.ncbi.nlm.nih.gov/pubmed/30462303
http://dx.doi.org/10.1093/nar/gky1133
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author Carvalho-Silva, Denise
Pierleoni, Andrea
Pignatelli, Miguel
Ong, ChuangKee
Fumis, Luca
Karamanis, Nikiforos
Carmona, Miguel
Faulconbridge, Adam
Hercules, Andrew
McAuley, Elaine
Miranda, Alfredo
Peat, Gareth
Spitzer, Michaela
Barrett, Jeffrey
Hulcoop, David G
Papa, Eliseo
Koscielny, Gautier
Dunham, Ian
author_facet Carvalho-Silva, Denise
Pierleoni, Andrea
Pignatelli, Miguel
Ong, ChuangKee
Fumis, Luca
Karamanis, Nikiforos
Carmona, Miguel
Faulconbridge, Adam
Hercules, Andrew
McAuley, Elaine
Miranda, Alfredo
Peat, Gareth
Spitzer, Michaela
Barrett, Jeffrey
Hulcoop, David G
Papa, Eliseo
Koscielny, Gautier
Dunham, Ian
author_sort Carvalho-Silva, Denise
collection PubMed
description The Open Targets Platform integrates evidence from genetics, genomics, transcriptomics, drugs, animal models and scientific literature to score and rank target-disease associations for drug target identification. The associations are displayed in an intuitive user interface (https://www.targetvalidation.org), and are available through a REST-API (https://api.opentargets.io/v3/platform/docs/swagger-ui) and a bulk download (https://www.targetvalidation.org/downloads/data). In addition to target-disease associations, we also aggregate and display data at the target and disease levels to aid target prioritisation. Since our first publication two years ago, we have made eight releases, added new data sources for target-disease associations, started including causal genetic variants from non genome-wide targeted arrays, added new target and disease annotations, launched new visualisations and improved existing ones and released a new web tool for batch search of up to 200 targets. We have a new URL for the Open Targets Platform REST-API, new REST endpoints and also removed the need for authorisation for API fair use. Here, we present the latest developments of the Open Targets Platform, expanding the evidence and target-disease associations with new and improved data sources, refining data quality, enhancing website usability, and increasing our user base with our training workshops, user support, social media and bioinformatics forum engagement.
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spelling pubmed-63240732019-01-10 Open Targets Platform: new developments and updates two years on Carvalho-Silva, Denise Pierleoni, Andrea Pignatelli, Miguel Ong, ChuangKee Fumis, Luca Karamanis, Nikiforos Carmona, Miguel Faulconbridge, Adam Hercules, Andrew McAuley, Elaine Miranda, Alfredo Peat, Gareth Spitzer, Michaela Barrett, Jeffrey Hulcoop, David G Papa, Eliseo Koscielny, Gautier Dunham, Ian Nucleic Acids Res Database Issue The Open Targets Platform integrates evidence from genetics, genomics, transcriptomics, drugs, animal models and scientific literature to score and rank target-disease associations for drug target identification. The associations are displayed in an intuitive user interface (https://www.targetvalidation.org), and are available through a REST-API (https://api.opentargets.io/v3/platform/docs/swagger-ui) and a bulk download (https://www.targetvalidation.org/downloads/data). In addition to target-disease associations, we also aggregate and display data at the target and disease levels to aid target prioritisation. Since our first publication two years ago, we have made eight releases, added new data sources for target-disease associations, started including causal genetic variants from non genome-wide targeted arrays, added new target and disease annotations, launched new visualisations and improved existing ones and released a new web tool for batch search of up to 200 targets. We have a new URL for the Open Targets Platform REST-API, new REST endpoints and also removed the need for authorisation for API fair use. Here, we present the latest developments of the Open Targets Platform, expanding the evidence and target-disease associations with new and improved data sources, refining data quality, enhancing website usability, and increasing our user base with our training workshops, user support, social media and bioinformatics forum engagement. Oxford University Press 2019-01-08 2018-11-20 /pmc/articles/PMC6324073/ /pubmed/30462303 http://dx.doi.org/10.1093/nar/gky1133 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Issue
Carvalho-Silva, Denise
Pierleoni, Andrea
Pignatelli, Miguel
Ong, ChuangKee
Fumis, Luca
Karamanis, Nikiforos
Carmona, Miguel
Faulconbridge, Adam
Hercules, Andrew
McAuley, Elaine
Miranda, Alfredo
Peat, Gareth
Spitzer, Michaela
Barrett, Jeffrey
Hulcoop, David G
Papa, Eliseo
Koscielny, Gautier
Dunham, Ian
Open Targets Platform: new developments and updates two years on
title Open Targets Platform: new developments and updates two years on
title_full Open Targets Platform: new developments and updates two years on
title_fullStr Open Targets Platform: new developments and updates two years on
title_full_unstemmed Open Targets Platform: new developments and updates two years on
title_short Open Targets Platform: new developments and updates two years on
title_sort open targets platform: new developments and updates two years on
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6324073/
https://www.ncbi.nlm.nih.gov/pubmed/30462303
http://dx.doi.org/10.1093/nar/gky1133
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