Cargando…
The potential roles of long non‐coding RNAs in lipopolysaccharide‐induced human peripheral blood mononuclear cells as determined by microarray analysis
Sepsis arises from an aberrant and excessive host response to infection. Long noncoding RNAs (lncRNAs) are involved in multiple cellular functions, including inflammation and immunity. However, to date there has been no systematic attempt to identify lncRNAs whose expression is changed after the ind...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6325599/ https://www.ncbi.nlm.nih.gov/pubmed/30652082 http://dx.doi.org/10.1002/2211-5463.12556 |
_version_ | 1783386152275804160 |
---|---|
author | Zhang, Anqiang Lu, Hongxiang Wen, Dalin Sun, Jianhui Du, Juan Wang, Xu Gu, Wei Jiang, Jianxin |
author_facet | Zhang, Anqiang Lu, Hongxiang Wen, Dalin Sun, Jianhui Du, Juan Wang, Xu Gu, Wei Jiang, Jianxin |
author_sort | Zhang, Anqiang |
collection | PubMed |
description | Sepsis arises from an aberrant and excessive host response to infection. Long noncoding RNAs (lncRNAs) are involved in multiple cellular functions, including inflammation and immunity. However, to date there has been no systematic attempt to identify lncRNAs whose expression is changed after the induction of the innate immune response. In this study, we profiled global lncRNA and mRNA expression changes in peripheral blood mononuclear cells (PBMCs) treated with lipopolysaccharide (LPS) using a microarray platform. Of the 40 914 lncRNAs screened, 596 were significantly upregulated and 250 were significantly downregulated (corrected P < 0.05) in response to LPS. Of the 34 236 mRNAs screened, 802 were upregulated and 549 were downregulated. Functional annotation analysis indicated that lncRNA‐associated differentially expressed mRNAs were primarily enriched in host immune and inflammatory responses. This study provides the first lncRNA and mRNA transcriptomic landscape of LPS‐mediated changes in human PBMCs. These findings may provide potential insights into lncRNAs involved in the immunopathology of sepsis. |
format | Online Article Text |
id | pubmed-6325599 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-63255992019-01-16 The potential roles of long non‐coding RNAs in lipopolysaccharide‐induced human peripheral blood mononuclear cells as determined by microarray analysis Zhang, Anqiang Lu, Hongxiang Wen, Dalin Sun, Jianhui Du, Juan Wang, Xu Gu, Wei Jiang, Jianxin FEBS Open Bio Research Articles Sepsis arises from an aberrant and excessive host response to infection. Long noncoding RNAs (lncRNAs) are involved in multiple cellular functions, including inflammation and immunity. However, to date there has been no systematic attempt to identify lncRNAs whose expression is changed after the induction of the innate immune response. In this study, we profiled global lncRNA and mRNA expression changes in peripheral blood mononuclear cells (PBMCs) treated with lipopolysaccharide (LPS) using a microarray platform. Of the 40 914 lncRNAs screened, 596 were significantly upregulated and 250 were significantly downregulated (corrected P < 0.05) in response to LPS. Of the 34 236 mRNAs screened, 802 were upregulated and 549 were downregulated. Functional annotation analysis indicated that lncRNA‐associated differentially expressed mRNAs were primarily enriched in host immune and inflammatory responses. This study provides the first lncRNA and mRNA transcriptomic landscape of LPS‐mediated changes in human PBMCs. These findings may provide potential insights into lncRNAs involved in the immunopathology of sepsis. John Wiley and Sons Inc. 2018-12-25 /pmc/articles/PMC6325599/ /pubmed/30652082 http://dx.doi.org/10.1002/2211-5463.12556 Text en © 2018 The Authors. Published by FEBS Press and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Zhang, Anqiang Lu, Hongxiang Wen, Dalin Sun, Jianhui Du, Juan Wang, Xu Gu, Wei Jiang, Jianxin The potential roles of long non‐coding RNAs in lipopolysaccharide‐induced human peripheral blood mononuclear cells as determined by microarray analysis |
title | The potential roles of long non‐coding RNAs in lipopolysaccharide‐induced human peripheral blood mononuclear cells as determined by microarray analysis |
title_full | The potential roles of long non‐coding RNAs in lipopolysaccharide‐induced human peripheral blood mononuclear cells as determined by microarray analysis |
title_fullStr | The potential roles of long non‐coding RNAs in lipopolysaccharide‐induced human peripheral blood mononuclear cells as determined by microarray analysis |
title_full_unstemmed | The potential roles of long non‐coding RNAs in lipopolysaccharide‐induced human peripheral blood mononuclear cells as determined by microarray analysis |
title_short | The potential roles of long non‐coding RNAs in lipopolysaccharide‐induced human peripheral blood mononuclear cells as determined by microarray analysis |
title_sort | potential roles of long non‐coding rnas in lipopolysaccharide‐induced human peripheral blood mononuclear cells as determined by microarray analysis |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6325599/ https://www.ncbi.nlm.nih.gov/pubmed/30652082 http://dx.doi.org/10.1002/2211-5463.12556 |
work_keys_str_mv | AT zhanganqiang thepotentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT luhongxiang thepotentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT wendalin thepotentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT sunjianhui thepotentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT dujuan thepotentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT wangxu thepotentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT guwei thepotentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT jiangjianxin thepotentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT zhanganqiang potentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT luhongxiang potentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT wendalin potentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT sunjianhui potentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT dujuan potentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT wangxu potentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT guwei potentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis AT jiangjianxin potentialrolesoflongnoncodingrnasinlipopolysaccharideinducedhumanperipheralbloodmononuclearcellsasdeterminedbymicroarrayanalysis |