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Fine-Grain Segmentation of the Intervertebral Discs from MR Spine Images Using Deep Convolutional Neural Networks: BSU-Net

We propose a new deep learning network capable of successfully segmenting intervertebral discs and their complex boundaries from magnetic resonance (MR) spine images. The existing U-network (U-net) is known to perform well in various segmentation tasks in medical images; however, its performance wit...

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Detalles Bibliográficos
Autores principales: Kim, Sewon, Bae, Won C., Masuda, Koichi, Chung, Christine B., Hwang, Dosik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6326186/
https://www.ncbi.nlm.nih.gov/pubmed/30637135
http://dx.doi.org/10.3390/app8091656
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author Kim, Sewon
Bae, Won C.
Masuda, Koichi
Chung, Christine B.
Hwang, Dosik
author_facet Kim, Sewon
Bae, Won C.
Masuda, Koichi
Chung, Christine B.
Hwang, Dosik
author_sort Kim, Sewon
collection PubMed
description We propose a new deep learning network capable of successfully segmenting intervertebral discs and their complex boundaries from magnetic resonance (MR) spine images. The existing U-network (U-net) is known to perform well in various segmentation tasks in medical images; however, its performance with respect to details of segmentation such as boundaries is limited by the structural limitations of a max-pooling layer that plays a key role in feature extraction process in the U-net. We designed a modified convolutional and pooling layer scheme and applied a cascaded learning method to overcome these structural limitations of the max-pooling layer of a conventional U-net. The proposed network achieved 3% higher Dice similarity coefficient (DSC) than conventional U-net for intervertebral disc segmentation (89.44% vs. 86.44%, respectively; p < 0.001). For intervertebral disc boundary segmentation, the proposed network achieved 10.46% higher DSC than conventional U-net (54.62% vs. 44.16%, respectively; p < 0.001).
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spelling pubmed-63261862019-09-01 Fine-Grain Segmentation of the Intervertebral Discs from MR Spine Images Using Deep Convolutional Neural Networks: BSU-Net Kim, Sewon Bae, Won C. Masuda, Koichi Chung, Christine B. Hwang, Dosik Appl Sci (Basel) Article We propose a new deep learning network capable of successfully segmenting intervertebral discs and their complex boundaries from magnetic resonance (MR) spine images. The existing U-network (U-net) is known to perform well in various segmentation tasks in medical images; however, its performance with respect to details of segmentation such as boundaries is limited by the structural limitations of a max-pooling layer that plays a key role in feature extraction process in the U-net. We designed a modified convolutional and pooling layer scheme and applied a cascaded learning method to overcome these structural limitations of the max-pooling layer of a conventional U-net. The proposed network achieved 3% higher Dice similarity coefficient (DSC) than conventional U-net for intervertebral disc segmentation (89.44% vs. 86.44%, respectively; p < 0.001). For intervertebral disc boundary segmentation, the proposed network achieved 10.46% higher DSC than conventional U-net (54.62% vs. 44.16%, respectively; p < 0.001). 2018-09-14 2018-09 /pmc/articles/PMC6326186/ /pubmed/30637135 http://dx.doi.org/10.3390/app8091656 Text en Submitted for possible open access publication under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Kim, Sewon
Bae, Won C.
Masuda, Koichi
Chung, Christine B.
Hwang, Dosik
Fine-Grain Segmentation of the Intervertebral Discs from MR Spine Images Using Deep Convolutional Neural Networks: BSU-Net
title Fine-Grain Segmentation of the Intervertebral Discs from MR Spine Images Using Deep Convolutional Neural Networks: BSU-Net
title_full Fine-Grain Segmentation of the Intervertebral Discs from MR Spine Images Using Deep Convolutional Neural Networks: BSU-Net
title_fullStr Fine-Grain Segmentation of the Intervertebral Discs from MR Spine Images Using Deep Convolutional Neural Networks: BSU-Net
title_full_unstemmed Fine-Grain Segmentation of the Intervertebral Discs from MR Spine Images Using Deep Convolutional Neural Networks: BSU-Net
title_short Fine-Grain Segmentation of the Intervertebral Discs from MR Spine Images Using Deep Convolutional Neural Networks: BSU-Net
title_sort fine-grain segmentation of the intervertebral discs from mr spine images using deep convolutional neural networks: bsu-net
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6326186/
https://www.ncbi.nlm.nih.gov/pubmed/30637135
http://dx.doi.org/10.3390/app8091656
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