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A tightly regulated and adjustable CRISPR-dCas9 based AND gate in yeast

The robust and precise on and off switching of one or more genes of interest, followed by expression or repression is essential for many biological circuits as well as for industrial applications. However, many regulated systems published to date influence the viability of the host cell, show high b...

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Autores principales: Hofmann, Anja, Falk, Johannes, Prangemeier, Tim, Happel, Dominic, Köber, Adrian, Christmann, Andreas, Koeppl, Heinz, Kolmar, Harald
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6326796/
https://www.ncbi.nlm.nih.gov/pubmed/30476163
http://dx.doi.org/10.1093/nar/gky1191
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author Hofmann, Anja
Falk, Johannes
Prangemeier, Tim
Happel, Dominic
Köber, Adrian
Christmann, Andreas
Koeppl, Heinz
Kolmar, Harald
author_facet Hofmann, Anja
Falk, Johannes
Prangemeier, Tim
Happel, Dominic
Köber, Adrian
Christmann, Andreas
Koeppl, Heinz
Kolmar, Harald
author_sort Hofmann, Anja
collection PubMed
description The robust and precise on and off switching of one or more genes of interest, followed by expression or repression is essential for many biological circuits as well as for industrial applications. However, many regulated systems published to date influence the viability of the host cell, show high basal expression or enable only the overexpression of the target gene without the possibility of fine regulation. Herein, we describe an AND gate designed to overcome these limitations by combining the advantages of three well established systems, namely the scaffold RNA CRISPR/dCas9 platform that is controlled by Gal10 as a natural and by LexA-ER-AD as heterologous transcription factor. We hence developed a predictable and modular, versatile expression control system. The selection of a reporter gene set up combining a gene of interest (GOI) with a fluorophore by the ribosomal skipping T2A sequence allows to adapt the system to any gene of interest without losing reporter function. In order to obtain a better understanding of the underlying principles and the functioning of our system, we backed our experimental findings with the development of a mathematical model and single-cell analysis.
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spelling pubmed-63267962019-01-15 A tightly regulated and adjustable CRISPR-dCas9 based AND gate in yeast Hofmann, Anja Falk, Johannes Prangemeier, Tim Happel, Dominic Köber, Adrian Christmann, Andreas Koeppl, Heinz Kolmar, Harald Nucleic Acids Res Synthetic Biology and Bioengineering The robust and precise on and off switching of one or more genes of interest, followed by expression or repression is essential for many biological circuits as well as for industrial applications. However, many regulated systems published to date influence the viability of the host cell, show high basal expression or enable only the overexpression of the target gene without the possibility of fine regulation. Herein, we describe an AND gate designed to overcome these limitations by combining the advantages of three well established systems, namely the scaffold RNA CRISPR/dCas9 platform that is controlled by Gal10 as a natural and by LexA-ER-AD as heterologous transcription factor. We hence developed a predictable and modular, versatile expression control system. The selection of a reporter gene set up combining a gene of interest (GOI) with a fluorophore by the ribosomal skipping T2A sequence allows to adapt the system to any gene of interest without losing reporter function. In order to obtain a better understanding of the underlying principles and the functioning of our system, we backed our experimental findings with the development of a mathematical model and single-cell analysis. Oxford University Press 2019-01-10 2018-11-22 /pmc/articles/PMC6326796/ /pubmed/30476163 http://dx.doi.org/10.1093/nar/gky1191 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Synthetic Biology and Bioengineering
Hofmann, Anja
Falk, Johannes
Prangemeier, Tim
Happel, Dominic
Köber, Adrian
Christmann, Andreas
Koeppl, Heinz
Kolmar, Harald
A tightly regulated and adjustable CRISPR-dCas9 based AND gate in yeast
title A tightly regulated and adjustable CRISPR-dCas9 based AND gate in yeast
title_full A tightly regulated and adjustable CRISPR-dCas9 based AND gate in yeast
title_fullStr A tightly regulated and adjustable CRISPR-dCas9 based AND gate in yeast
title_full_unstemmed A tightly regulated and adjustable CRISPR-dCas9 based AND gate in yeast
title_short A tightly regulated and adjustable CRISPR-dCas9 based AND gate in yeast
title_sort tightly regulated and adjustable crispr-dcas9 based and gate in yeast
topic Synthetic Biology and Bioengineering
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6326796/
https://www.ncbi.nlm.nih.gov/pubmed/30476163
http://dx.doi.org/10.1093/nar/gky1191
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