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A jumping crystal predicted with molecular dynamics and analysed with TLS refinement against powder diffraction data

By running a temperature series of molecular dynamics (MD) simulations starting from the known low-temperature phase, the experimentally observed phase transition in a ‘jumping crystal’ was captured, thereby providing a prediction of the unknown crystal structure of the high-temperature phase and cl...

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Autores principales: van de Streek, Jacco, Alig, Edith, Parsons, Simon, Vella-Zarb, Liana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6327187/
https://www.ncbi.nlm.nih.gov/pubmed/30713711
http://dx.doi.org/10.1107/S205225251801686X
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author van de Streek, Jacco
Alig, Edith
Parsons, Simon
Vella-Zarb, Liana
author_facet van de Streek, Jacco
Alig, Edith
Parsons, Simon
Vella-Zarb, Liana
author_sort van de Streek, Jacco
collection PubMed
description By running a temperature series of molecular dynamics (MD) simulations starting from the known low-temperature phase, the experimentally observed phase transition in a ‘jumping crystal’ was captured, thereby providing a prediction of the unknown crystal structure of the high-temperature phase and clarifying the phase-transition mechanism. The phase transition is accompanied by a discontinuity in two of the unit-cell parameters. The structure of the high-temperature phase is very similar to that of the low-temperature phase. The anisotropic displacement parameters calculated from the MD simulations readily identified libration as the driving force behind the phase transition. Both the predicted crystal structure and the phase-transition mechanism were verified experimentally using TLS (translation, libration, screw) refinement against X-ray powder diffraction data.
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spelling pubmed-63271872019-02-01 A jumping crystal predicted with molecular dynamics and analysed with TLS refinement against powder diffraction data van de Streek, Jacco Alig, Edith Parsons, Simon Vella-Zarb, Liana IUCrJ Research Papers By running a temperature series of molecular dynamics (MD) simulations starting from the known low-temperature phase, the experimentally observed phase transition in a ‘jumping crystal’ was captured, thereby providing a prediction of the unknown crystal structure of the high-temperature phase and clarifying the phase-transition mechanism. The phase transition is accompanied by a discontinuity in two of the unit-cell parameters. The structure of the high-temperature phase is very similar to that of the low-temperature phase. The anisotropic displacement parameters calculated from the MD simulations readily identified libration as the driving force behind the phase transition. Both the predicted crystal structure and the phase-transition mechanism were verified experimentally using TLS (translation, libration, screw) refinement against X-ray powder diffraction data. International Union of Crystallography 2019-01-01 /pmc/articles/PMC6327187/ /pubmed/30713711 http://dx.doi.org/10.1107/S205225251801686X Text en © Jacco van de Streek et al. 2019 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Papers
van de Streek, Jacco
Alig, Edith
Parsons, Simon
Vella-Zarb, Liana
A jumping crystal predicted with molecular dynamics and analysed with TLS refinement against powder diffraction data
title A jumping crystal predicted with molecular dynamics and analysed with TLS refinement against powder diffraction data
title_full A jumping crystal predicted with molecular dynamics and analysed with TLS refinement against powder diffraction data
title_fullStr A jumping crystal predicted with molecular dynamics and analysed with TLS refinement against powder diffraction data
title_full_unstemmed A jumping crystal predicted with molecular dynamics and analysed with TLS refinement against powder diffraction data
title_short A jumping crystal predicted with molecular dynamics and analysed with TLS refinement against powder diffraction data
title_sort jumping crystal predicted with molecular dynamics and analysed with tls refinement against powder diffraction data
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6327187/
https://www.ncbi.nlm.nih.gov/pubmed/30713711
http://dx.doi.org/10.1107/S205225251801686X
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