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Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema marinoi

When studying diatoms, an important consideration is the role of associated bacteria in the diatom-microbiome holobiont. To that end, bacteria isolated from a culture of Skeletonema marinoi strain R05AC were sequenced, one of which being bacterial strain SMR1, presented here. The genome consists of...

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Autores principales: Töpel, Mats, Pinder, Matthew I.M., Johansson, Oskar N., Kourtchenko, Olga, Clarke, Adrian K., Godhe, Anna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6328299/
https://www.ncbi.nlm.nih.gov/pubmed/30662570
http://dx.doi.org/10.7150/jgen.30559
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author Töpel, Mats
Pinder, Matthew I.M.
Johansson, Oskar N.
Kourtchenko, Olga
Clarke, Adrian K.
Godhe, Anna
author_facet Töpel, Mats
Pinder, Matthew I.M.
Johansson, Oskar N.
Kourtchenko, Olga
Clarke, Adrian K.
Godhe, Anna
author_sort Töpel, Mats
collection PubMed
description When studying diatoms, an important consideration is the role of associated bacteria in the diatom-microbiome holobiont. To that end, bacteria isolated from a culture of Skeletonema marinoi strain R05AC were sequenced, one of which being bacterial strain SMR1, presented here. The genome consists of a circular chromosome and seven circular plasmids, totalling 5,121,602 bp. After phylotaxonomic analysis and 16S rRNA sequence comparison, we place this strain in the taxon Sulfitobacter pseudonitzschiae on account of similarity to the type strain. The annotated genome suggests similar interactions between strain SMR1 and its host diatom as have been shown previously in diatom-associated Sulfitobacter, for example bacterial production of growth hormone for its host, and breakdown of diatom-derived DMSP by Sulfitobacter for use as a sulfur source.
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spelling pubmed-63282992019-01-18 Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema marinoi Töpel, Mats Pinder, Matthew I.M. Johansson, Oskar N. Kourtchenko, Olga Clarke, Adrian K. Godhe, Anna J Genomics Short Research Communication When studying diatoms, an important consideration is the role of associated bacteria in the diatom-microbiome holobiont. To that end, bacteria isolated from a culture of Skeletonema marinoi strain R05AC were sequenced, one of which being bacterial strain SMR1, presented here. The genome consists of a circular chromosome and seven circular plasmids, totalling 5,121,602 bp. After phylotaxonomic analysis and 16S rRNA sequence comparison, we place this strain in the taxon Sulfitobacter pseudonitzschiae on account of similarity to the type strain. The annotated genome suggests similar interactions between strain SMR1 and its host diatom as have been shown previously in diatom-associated Sulfitobacter, for example bacterial production of growth hormone for its host, and breakdown of diatom-derived DMSP by Sulfitobacter for use as a sulfur source. Ivyspring International Publisher 2019-01-01 /pmc/articles/PMC6328299/ /pubmed/30662570 http://dx.doi.org/10.7150/jgen.30559 Text en © Ivyspring International Publisher This is an open access article distributed under the terms of the Creative Commons Attribution (CC BY-NC) license (https://creativecommons.org/licenses/by-nc/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Short Research Communication
Töpel, Mats
Pinder, Matthew I.M.
Johansson, Oskar N.
Kourtchenko, Olga
Clarke, Adrian K.
Godhe, Anna
Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema marinoi
title Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema marinoi
title_full Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema marinoi
title_fullStr Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema marinoi
title_full_unstemmed Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema marinoi
title_short Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema marinoi
title_sort complete genome sequence of novel sulfitobacter pseudonitzschiae strain smr1, isolated from a culture of the marine diatom skeletonema marinoi
topic Short Research Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6328299/
https://www.ncbi.nlm.nih.gov/pubmed/30662570
http://dx.doi.org/10.7150/jgen.30559
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