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RNA sequence analysis data of Peronospora destructor maintained on onions
Peronospora destructor (Berk.) is an important biotrophic oomycete that causes downy mildew on onion (Allium Cepa L.) worldwide, especially in humid and temperate regions. The disease attacks bulb and seed production of onion, resulting in losses in yield and quality of bulbs. Epidemiological studie...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6329361/ https://www.ncbi.nlm.nih.gov/pubmed/30656200 http://dx.doi.org/10.1016/j.dib.2018.12.039 |
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author | Fujiwara, Kazuki Fujikawa, Takashi Kawakami, Akira Sonoda, Ryoichi Miyasaka, Atsushi |
author_facet | Fujiwara, Kazuki Fujikawa, Takashi Kawakami, Akira Sonoda, Ryoichi Miyasaka, Atsushi |
author_sort | Fujiwara, Kazuki |
collection | PubMed |
description | Peronospora destructor (Berk.) is an important biotrophic oomycete that causes downy mildew on onion (Allium Cepa L.) worldwide, especially in humid and temperate regions. The disease attacks bulb and seed production of onion, resulting in losses in yield and quality of bulbs. Epidemiological studies have increased our understanding and control of downy mildew on onion; however, little is known about the molecular aspects of P. destructor behavior during infection. Here, we isolated RNA from four samples of sporangia and sporangiophores of P. destructor, which were maintained by spore inoculation onto onions in a growth chamber. We then used an Ion PGM next generation sequencer to acquire and assemble the RNA sequences of P. destructor. By transcriptome shotgun assembly, we obtained 2335 contigs (N50, 884 nucleotides (nt); mean length, 881.6 nt). The data are accessible at NCBI (BioProject PRJNA391849). Our data resource will facilitate further studies of the molecular events during P. destructor infection. |
format | Online Article Text |
id | pubmed-6329361 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-63293612019-01-17 RNA sequence analysis data of Peronospora destructor maintained on onions Fujiwara, Kazuki Fujikawa, Takashi Kawakami, Akira Sonoda, Ryoichi Miyasaka, Atsushi Data Brief Agricultural and Biological Science Peronospora destructor (Berk.) is an important biotrophic oomycete that causes downy mildew on onion (Allium Cepa L.) worldwide, especially in humid and temperate regions. The disease attacks bulb and seed production of onion, resulting in losses in yield and quality of bulbs. Epidemiological studies have increased our understanding and control of downy mildew on onion; however, little is known about the molecular aspects of P. destructor behavior during infection. Here, we isolated RNA from four samples of sporangia and sporangiophores of P. destructor, which were maintained by spore inoculation onto onions in a growth chamber. We then used an Ion PGM next generation sequencer to acquire and assemble the RNA sequences of P. destructor. By transcriptome shotgun assembly, we obtained 2335 contigs (N50, 884 nucleotides (nt); mean length, 881.6 nt). The data are accessible at NCBI (BioProject PRJNA391849). Our data resource will facilitate further studies of the molecular events during P. destructor infection. Elsevier 2018-12-18 /pmc/articles/PMC6329361/ /pubmed/30656200 http://dx.doi.org/10.1016/j.dib.2018.12.039 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Agricultural and Biological Science Fujiwara, Kazuki Fujikawa, Takashi Kawakami, Akira Sonoda, Ryoichi Miyasaka, Atsushi RNA sequence analysis data of Peronospora destructor maintained on onions |
title | RNA sequence analysis data of Peronospora destructor maintained on onions |
title_full | RNA sequence analysis data of Peronospora destructor maintained on onions |
title_fullStr | RNA sequence analysis data of Peronospora destructor maintained on onions |
title_full_unstemmed | RNA sequence analysis data of Peronospora destructor maintained on onions |
title_short | RNA sequence analysis data of Peronospora destructor maintained on onions |
title_sort | rna sequence analysis data of peronospora destructor maintained on onions |
topic | Agricultural and Biological Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6329361/ https://www.ncbi.nlm.nih.gov/pubmed/30656200 http://dx.doi.org/10.1016/j.dib.2018.12.039 |
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