Cargando…

RNA sequence analysis data of Peronospora destructor maintained on onions

Peronospora destructor (Berk.) is an important biotrophic oomycete that causes downy mildew on onion (Allium Cepa L.) worldwide, especially in humid and temperate regions. The disease attacks bulb and seed production of onion, resulting in losses in yield and quality of bulbs. Epidemiological studie...

Descripción completa

Detalles Bibliográficos
Autores principales: Fujiwara, Kazuki, Fujikawa, Takashi, Kawakami, Akira, Sonoda, Ryoichi, Miyasaka, Atsushi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6329361/
https://www.ncbi.nlm.nih.gov/pubmed/30656200
http://dx.doi.org/10.1016/j.dib.2018.12.039
_version_ 1783386821317623808
author Fujiwara, Kazuki
Fujikawa, Takashi
Kawakami, Akira
Sonoda, Ryoichi
Miyasaka, Atsushi
author_facet Fujiwara, Kazuki
Fujikawa, Takashi
Kawakami, Akira
Sonoda, Ryoichi
Miyasaka, Atsushi
author_sort Fujiwara, Kazuki
collection PubMed
description Peronospora destructor (Berk.) is an important biotrophic oomycete that causes downy mildew on onion (Allium Cepa L.) worldwide, especially in humid and temperate regions. The disease attacks bulb and seed production of onion, resulting in losses in yield and quality of bulbs. Epidemiological studies have increased our understanding and control of downy mildew on onion; however, little is known about the molecular aspects of P. destructor behavior during infection. Here, we isolated RNA from four samples of sporangia and sporangiophores of P. destructor, which were maintained by spore inoculation onto onions in a growth chamber. We then used an Ion PGM next generation sequencer to acquire and assemble the RNA sequences of P. destructor. By transcriptome shotgun assembly, we obtained 2335 contigs (N50, 884 nucleotides (nt); mean length, 881.6 nt). The data are accessible at NCBI (BioProject PRJNA391849). Our data resource will facilitate further studies of the molecular events during P. destructor infection.
format Online
Article
Text
id pubmed-6329361
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-63293612019-01-17 RNA sequence analysis data of Peronospora destructor maintained on onions Fujiwara, Kazuki Fujikawa, Takashi Kawakami, Akira Sonoda, Ryoichi Miyasaka, Atsushi Data Brief Agricultural and Biological Science Peronospora destructor (Berk.) is an important biotrophic oomycete that causes downy mildew on onion (Allium Cepa L.) worldwide, especially in humid and temperate regions. The disease attacks bulb and seed production of onion, resulting in losses in yield and quality of bulbs. Epidemiological studies have increased our understanding and control of downy mildew on onion; however, little is known about the molecular aspects of P. destructor behavior during infection. Here, we isolated RNA from four samples of sporangia and sporangiophores of P. destructor, which were maintained by spore inoculation onto onions in a growth chamber. We then used an Ion PGM next generation sequencer to acquire and assemble the RNA sequences of P. destructor. By transcriptome shotgun assembly, we obtained 2335 contigs (N50, 884 nucleotides (nt); mean length, 881.6 nt). The data are accessible at NCBI (BioProject PRJNA391849). Our data resource will facilitate further studies of the molecular events during P. destructor infection. Elsevier 2018-12-18 /pmc/articles/PMC6329361/ /pubmed/30656200 http://dx.doi.org/10.1016/j.dib.2018.12.039 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Agricultural and Biological Science
Fujiwara, Kazuki
Fujikawa, Takashi
Kawakami, Akira
Sonoda, Ryoichi
Miyasaka, Atsushi
RNA sequence analysis data of Peronospora destructor maintained on onions
title RNA sequence analysis data of Peronospora destructor maintained on onions
title_full RNA sequence analysis data of Peronospora destructor maintained on onions
title_fullStr RNA sequence analysis data of Peronospora destructor maintained on onions
title_full_unstemmed RNA sequence analysis data of Peronospora destructor maintained on onions
title_short RNA sequence analysis data of Peronospora destructor maintained on onions
title_sort rna sequence analysis data of peronospora destructor maintained on onions
topic Agricultural and Biological Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6329361/
https://www.ncbi.nlm.nih.gov/pubmed/30656200
http://dx.doi.org/10.1016/j.dib.2018.12.039
work_keys_str_mv AT fujiwarakazuki rnasequenceanalysisdataofperonosporadestructormaintainedononions
AT fujikawatakashi rnasequenceanalysisdataofperonosporadestructormaintainedononions
AT kawakamiakira rnasequenceanalysisdataofperonosporadestructormaintainedononions
AT sonodaryoichi rnasequenceanalysisdataofperonosporadestructormaintainedononions
AT miyasakaatsushi rnasequenceanalysisdataofperonosporadestructormaintainedononions