SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications

SUMMARY: SATurn is a modular, open-source, bioinformatics platform designed to specifically address the problems of maintenance and longevity commonly associated with the development of simple tools funded by academic research grants. Applications developed in SATurn can be deployed as web-based too...

Descripción completa

Detalles Bibliográficos
Autores principales: Damerell, David R, Strain-Damerell, Claire, Garsot, Sefa, Joyce, Stephen P, Barrett, Paul, Marsden, Brian D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6329998/
https://www.ncbi.nlm.nih.gov/pubmed/29982288
http://dx.doi.org/10.1093/bioinformatics/bty549
_version_ 1783386908541321216
author Damerell, David R
Strain-Damerell, Claire
Garsot, Sefa
Joyce, Stephen P
Barrett, Paul
Marsden, Brian D
author_facet Damerell, David R
Strain-Damerell, Claire
Garsot, Sefa
Joyce, Stephen P
Barrett, Paul
Marsden, Brian D
author_sort Damerell, David R
collection PubMed
description SUMMARY: SATurn is a modular, open-source, bioinformatics platform designed to specifically address the problems of maintenance and longevity commonly associated with the development of simple tools funded by academic research grants. Applications developed in SATurn can be deployed as web-based tools, standalone applications or hybrid tools which have the benefits of both. Within the Structural Genomics Consortium we have utilized SATurn to create a bioinformatics portal which routinely supports a diverse group of scientists including those interested in structural biology, cloning, glycobiology and chemical biology. AVAILABILITY AND IMPLEMENTATION: https://github.com/ddamerell53/SATurn SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
format Online
Article
Text
id pubmed-6329998
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-63299982019-01-15 SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications Damerell, David R Strain-Damerell, Claire Garsot, Sefa Joyce, Stephen P Barrett, Paul Marsden, Brian D Bioinformatics Applications Notes SUMMARY: SATurn is a modular, open-source, bioinformatics platform designed to specifically address the problems of maintenance and longevity commonly associated with the development of simple tools funded by academic research grants. Applications developed in SATurn can be deployed as web-based tools, standalone applications or hybrid tools which have the benefits of both. Within the Structural Genomics Consortium we have utilized SATurn to create a bioinformatics portal which routinely supports a diverse group of scientists including those interested in structural biology, cloning, glycobiology and chemical biology. AVAILABILITY AND IMPLEMENTATION: https://github.com/ddamerell53/SATurn SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2019-01-15 2018-07-04 /pmc/articles/PMC6329998/ /pubmed/29982288 http://dx.doi.org/10.1093/bioinformatics/bty549 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Damerell, David R
Strain-Damerell, Claire
Garsot, Sefa
Joyce, Stephen P
Barrett, Paul
Marsden, Brian D
SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications
title SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications
title_full SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications
title_fullStr SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications
title_full_unstemmed SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications
title_short SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications
title_sort saturn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6329998/
https://www.ncbi.nlm.nih.gov/pubmed/29982288
http://dx.doi.org/10.1093/bioinformatics/bty549
work_keys_str_mv AT damerelldavidr saturnamodularbioinformaticsframeworkforthedesignofrobustmaintainablewebbasedandstandaloneapplications
AT straindamerellclaire saturnamodularbioinformaticsframeworkforthedesignofrobustmaintainablewebbasedandstandaloneapplications
AT garsotsefa saturnamodularbioinformaticsframeworkforthedesignofrobustmaintainablewebbasedandstandaloneapplications
AT joycestephenp saturnamodularbioinformaticsframeworkforthedesignofrobustmaintainablewebbasedandstandaloneapplications
AT barrettpaul saturnamodularbioinformaticsframeworkforthedesignofrobustmaintainablewebbasedandstandaloneapplications
AT marsdenbriand saturnamodularbioinformaticsframeworkforthedesignofrobustmaintainablewebbasedandstandaloneapplications

Ejemplares similares