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Application of convolutional neural networks for classification of adult mosquitoes in the field

Dengue, chikungunya and Zika are arboviruses transmitted by mosquitos of the genus Aedes and have caused several outbreaks in world over the past ten years. Morphological identification of mosquitos is currently restricted due to the small number of adequately trained professionals. We implemented a...

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Autores principales: Motta, Daniel, Santos, Alex Álisson Bandeira, Winkler, Ingrid, Machado, Bruna Aparecida Souza, Pereira, Daniel André Dias Imperial, Cavalcanti, Alexandre Morais, Fonseca, Eduardo Oyama Lins, Kirchner, Frank, Badaró, Roberto
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6331110/
https://www.ncbi.nlm.nih.gov/pubmed/30640961
http://dx.doi.org/10.1371/journal.pone.0210829
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author Motta, Daniel
Santos, Alex Álisson Bandeira
Winkler, Ingrid
Machado, Bruna Aparecida Souza
Pereira, Daniel André Dias Imperial
Cavalcanti, Alexandre Morais
Fonseca, Eduardo Oyama Lins
Kirchner, Frank
Badaró, Roberto
author_facet Motta, Daniel
Santos, Alex Álisson Bandeira
Winkler, Ingrid
Machado, Bruna Aparecida Souza
Pereira, Daniel André Dias Imperial
Cavalcanti, Alexandre Morais
Fonseca, Eduardo Oyama Lins
Kirchner, Frank
Badaró, Roberto
author_sort Motta, Daniel
collection PubMed
description Dengue, chikungunya and Zika are arboviruses transmitted by mosquitos of the genus Aedes and have caused several outbreaks in world over the past ten years. Morphological identification of mosquitos is currently restricted due to the small number of adequately trained professionals. We implemented a computational model based on a convolutional neural network (CNN) to extract features from mosquito images to identify adult mosquitoes from the species Aedes aegypti, Aedes albopictus and Culex quinquefasciatus. To train the CNN to perform automatic morphological classification of mosquitoes, we used a dataset that included 4,056 mosquito images. Three neural networks, including LeNet, AlexNet and GoogleNet, were used. During the validation phase, the accuracy of the mosquito classification was 57.5% using LeNet, 74.7% using AlexNet and 83.9% using GoogleNet. During the testing phase, the best result (76.2%) was obtained using GoogleNet; results of 52.4% and 51.2% were obtained using LeNet and AlexNet, respectively. Significantly, accuracies of 100% and 90% were achieved for the classification of Aedes and Culex, respectively. A classification accuracy of 82% was achieved for Aedes females. Our results provide information that is fundamental for the automatic morphological classification of adult mosquito species in field. The use of CNN's is an important method for autonomous identification and is a valuable and accessible resource for health workers and taxonomists for the identification of some insects that can transmit infectious agents to humans.
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spelling pubmed-63311102019-02-01 Application of convolutional neural networks for classification of adult mosquitoes in the field Motta, Daniel Santos, Alex Álisson Bandeira Winkler, Ingrid Machado, Bruna Aparecida Souza Pereira, Daniel André Dias Imperial Cavalcanti, Alexandre Morais Fonseca, Eduardo Oyama Lins Kirchner, Frank Badaró, Roberto PLoS One Research Article Dengue, chikungunya and Zika are arboviruses transmitted by mosquitos of the genus Aedes and have caused several outbreaks in world over the past ten years. Morphological identification of mosquitos is currently restricted due to the small number of adequately trained professionals. We implemented a computational model based on a convolutional neural network (CNN) to extract features from mosquito images to identify adult mosquitoes from the species Aedes aegypti, Aedes albopictus and Culex quinquefasciatus. To train the CNN to perform automatic morphological classification of mosquitoes, we used a dataset that included 4,056 mosquito images. Three neural networks, including LeNet, AlexNet and GoogleNet, were used. During the validation phase, the accuracy of the mosquito classification was 57.5% using LeNet, 74.7% using AlexNet and 83.9% using GoogleNet. During the testing phase, the best result (76.2%) was obtained using GoogleNet; results of 52.4% and 51.2% were obtained using LeNet and AlexNet, respectively. Significantly, accuracies of 100% and 90% were achieved for the classification of Aedes and Culex, respectively. A classification accuracy of 82% was achieved for Aedes females. Our results provide information that is fundamental for the automatic morphological classification of adult mosquito species in field. The use of CNN's is an important method for autonomous identification and is a valuable and accessible resource for health workers and taxonomists for the identification of some insects that can transmit infectious agents to humans. Public Library of Science 2019-01-14 /pmc/articles/PMC6331110/ /pubmed/30640961 http://dx.doi.org/10.1371/journal.pone.0210829 Text en © 2019 Motta et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Motta, Daniel
Santos, Alex Álisson Bandeira
Winkler, Ingrid
Machado, Bruna Aparecida Souza
Pereira, Daniel André Dias Imperial
Cavalcanti, Alexandre Morais
Fonseca, Eduardo Oyama Lins
Kirchner, Frank
Badaró, Roberto
Application of convolutional neural networks for classification of adult mosquitoes in the field
title Application of convolutional neural networks for classification of adult mosquitoes in the field
title_full Application of convolutional neural networks for classification of adult mosquitoes in the field
title_fullStr Application of convolutional neural networks for classification of adult mosquitoes in the field
title_full_unstemmed Application of convolutional neural networks for classification of adult mosquitoes in the field
title_short Application of convolutional neural networks for classification of adult mosquitoes in the field
title_sort application of convolutional neural networks for classification of adult mosquitoes in the field
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6331110/
https://www.ncbi.nlm.nih.gov/pubmed/30640961
http://dx.doi.org/10.1371/journal.pone.0210829
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