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Involving community in genes and pathway curation

Biocuration plays a crucial role in building databases and complex systems-level platforms required for processing, annotating and analyzing ‘Big Data’ in biology. However, biocuration efforts cannot keep pace with a dramatic increase in the production of omics data; this presents one of the bottlen...

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Autores principales: Naithani, Sushma, Gupta, Parul, Preece, Justin, Garg, Priyanka, Fraser, Valerie, Padgitt-Cobb, Lillian K, Martin, Matthew, Vining, Kelly, Jaiswal, Pankaj
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6334007/
https://www.ncbi.nlm.nih.gov/pubmed/30649295
http://dx.doi.org/10.1093/database/bay146
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author Naithani, Sushma
Gupta, Parul
Preece, Justin
Garg, Priyanka
Fraser, Valerie
Padgitt-Cobb, Lillian K
Martin, Matthew
Vining, Kelly
Jaiswal, Pankaj
author_facet Naithani, Sushma
Gupta, Parul
Preece, Justin
Garg, Priyanka
Fraser, Valerie
Padgitt-Cobb, Lillian K
Martin, Matthew
Vining, Kelly
Jaiswal, Pankaj
author_sort Naithani, Sushma
collection PubMed
description Biocuration plays a crucial role in building databases and complex systems-level platforms required for processing, annotating and analyzing ‘Big Data’ in biology. However, biocuration efforts cannot keep pace with a dramatic increase in the production of omics data; this presents one of the bottlenecks in genomics. In two pathway curation jamborees, Plant Reactome curators tested strategies for introducing researchers to pathway curation tools, harnessing biologists’ expertise in curating plant pathways and developing a network of community biocurators. We summarize the strategy, workflow and outcomes of these exercises, and discuss the role of community biocuration in advancing databases and genomic resources.
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spelling pubmed-63340072019-01-24 Involving community in genes and pathway curation Naithani, Sushma Gupta, Parul Preece, Justin Garg, Priyanka Fraser, Valerie Padgitt-Cobb, Lillian K Martin, Matthew Vining, Kelly Jaiswal, Pankaj Database (Oxford) Perspective/Opinion Biocuration plays a crucial role in building databases and complex systems-level platforms required for processing, annotating and analyzing ‘Big Data’ in biology. However, biocuration efforts cannot keep pace with a dramatic increase in the production of omics data; this presents one of the bottlenecks in genomics. In two pathway curation jamborees, Plant Reactome curators tested strategies for introducing researchers to pathway curation tools, harnessing biologists’ expertise in curating plant pathways and developing a network of community biocurators. We summarize the strategy, workflow and outcomes of these exercises, and discuss the role of community biocuration in advancing databases and genomic resources. Oxford University Press 2019-01-16 /pmc/articles/PMC6334007/ /pubmed/30649295 http://dx.doi.org/10.1093/database/bay146 Text en Published by Oxford University Press 2019. This work is written by US Government employees and is in the public domain in the US.
spellingShingle Perspective/Opinion
Naithani, Sushma
Gupta, Parul
Preece, Justin
Garg, Priyanka
Fraser, Valerie
Padgitt-Cobb, Lillian K
Martin, Matthew
Vining, Kelly
Jaiswal, Pankaj
Involving community in genes and pathway curation
title Involving community in genes and pathway curation
title_full Involving community in genes and pathway curation
title_fullStr Involving community in genes and pathway curation
title_full_unstemmed Involving community in genes and pathway curation
title_short Involving community in genes and pathway curation
title_sort involving community in genes and pathway curation
topic Perspective/Opinion
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6334007/
https://www.ncbi.nlm.nih.gov/pubmed/30649295
http://dx.doi.org/10.1093/database/bay146
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