Cargando…
Involving community in genes and pathway curation
Biocuration plays a crucial role in building databases and complex systems-level platforms required for processing, annotating and analyzing ‘Big Data’ in biology. However, biocuration efforts cannot keep pace with a dramatic increase in the production of omics data; this presents one of the bottlen...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6334007/ https://www.ncbi.nlm.nih.gov/pubmed/30649295 http://dx.doi.org/10.1093/database/bay146 |
_version_ | 1783387655782793216 |
---|---|
author | Naithani, Sushma Gupta, Parul Preece, Justin Garg, Priyanka Fraser, Valerie Padgitt-Cobb, Lillian K Martin, Matthew Vining, Kelly Jaiswal, Pankaj |
author_facet | Naithani, Sushma Gupta, Parul Preece, Justin Garg, Priyanka Fraser, Valerie Padgitt-Cobb, Lillian K Martin, Matthew Vining, Kelly Jaiswal, Pankaj |
author_sort | Naithani, Sushma |
collection | PubMed |
description | Biocuration plays a crucial role in building databases and complex systems-level platforms required for processing, annotating and analyzing ‘Big Data’ in biology. However, biocuration efforts cannot keep pace with a dramatic increase in the production of omics data; this presents one of the bottlenecks in genomics. In two pathway curation jamborees, Plant Reactome curators tested strategies for introducing researchers to pathway curation tools, harnessing biologists’ expertise in curating plant pathways and developing a network of community biocurators. We summarize the strategy, workflow and outcomes of these exercises, and discuss the role of community biocuration in advancing databases and genomic resources. |
format | Online Article Text |
id | pubmed-6334007 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-63340072019-01-24 Involving community in genes and pathway curation Naithani, Sushma Gupta, Parul Preece, Justin Garg, Priyanka Fraser, Valerie Padgitt-Cobb, Lillian K Martin, Matthew Vining, Kelly Jaiswal, Pankaj Database (Oxford) Perspective/Opinion Biocuration plays a crucial role in building databases and complex systems-level platforms required for processing, annotating and analyzing ‘Big Data’ in biology. However, biocuration efforts cannot keep pace with a dramatic increase in the production of omics data; this presents one of the bottlenecks in genomics. In two pathway curation jamborees, Plant Reactome curators tested strategies for introducing researchers to pathway curation tools, harnessing biologists’ expertise in curating plant pathways and developing a network of community biocurators. We summarize the strategy, workflow and outcomes of these exercises, and discuss the role of community biocuration in advancing databases and genomic resources. Oxford University Press 2019-01-16 /pmc/articles/PMC6334007/ /pubmed/30649295 http://dx.doi.org/10.1093/database/bay146 Text en Published by Oxford University Press 2019. This work is written by US Government employees and is in the public domain in the US. |
spellingShingle | Perspective/Opinion Naithani, Sushma Gupta, Parul Preece, Justin Garg, Priyanka Fraser, Valerie Padgitt-Cobb, Lillian K Martin, Matthew Vining, Kelly Jaiswal, Pankaj Involving community in genes and pathway curation |
title | Involving community in genes and pathway curation |
title_full | Involving community in genes and pathway curation |
title_fullStr | Involving community in genes and pathway curation |
title_full_unstemmed | Involving community in genes and pathway curation |
title_short | Involving community in genes and pathway curation |
title_sort | involving community in genes and pathway curation |
topic | Perspective/Opinion |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6334007/ https://www.ncbi.nlm.nih.gov/pubmed/30649295 http://dx.doi.org/10.1093/database/bay146 |
work_keys_str_mv | AT naithanisushma involvingcommunityingenesandpathwaycuration AT guptaparul involvingcommunityingenesandpathwaycuration AT preecejustin involvingcommunityingenesandpathwaycuration AT gargpriyanka involvingcommunityingenesandpathwaycuration AT fraservalerie involvingcommunityingenesandpathwaycuration AT padgittcobblilliank involvingcommunityingenesandpathwaycuration AT martinmatthew involvingcommunityingenesandpathwaycuration AT viningkelly involvingcommunityingenesandpathwaycuration AT jaiswalpankaj involvingcommunityingenesandpathwaycuration |