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FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community

The Functional Annotation of ANimal Genomes (FAANG) project aims, through a coordinated international effort, to provide high quality functional annotation of animal genomes with an initial focus on farmed and companion animals. A key goal of the initiative is to ensure high quality and rich support...

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Autores principales: Harrison, P. W., Fan, J., Richardson, D., Clarke, L., Zerbino, D., Cochrane, G., Archibald, A. L., Schmidt, C. J., Flicek, P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6334167/
https://www.ncbi.nlm.nih.gov/pubmed/30311252
http://dx.doi.org/10.1111/age.12736
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author Harrison, P. W.
Fan, J.
Richardson, D.
Clarke, L.
Zerbino, D.
Cochrane, G.
Archibald, A. L.
Schmidt, C. J.
Flicek, P.
author_facet Harrison, P. W.
Fan, J.
Richardson, D.
Clarke, L.
Zerbino, D.
Cochrane, G.
Archibald, A. L.
Schmidt, C. J.
Flicek, P.
author_sort Harrison, P. W.
collection PubMed
description The Functional Annotation of ANimal Genomes (FAANG) project aims, through a coordinated international effort, to provide high quality functional annotation of animal genomes with an initial focus on farmed and companion animals. A key goal of the initiative is to ensure high quality and rich supporting metadata to describe the project's animals, specimens, cell cultures and experimental assays. By defining rich sample and experimental metadata standards and promoting best practices in data descriptions, deposition and openness, FAANG champions higher quality and reusability of published datasets. FAANG has established a Data Coordination Centre, which sits at the heart of the Metadata and Data Sharing Committee. It continues to evolve the metadata standards, support submissions and, crucially, create powerful and accessible tools to support deposition and validation of metadata. FAANG conforms to the findable, accessible, interoperable, and reusable (FAIR) data principles, with high quality, open access and functionally interlinked data. In addition to data generated by FAANG members and specific FAANG projects, existing datasets that meet the main—or more permissive legacy—standards are incorporated into a central, focused, functional data resource portal for the entire farmed and companion animal community. Through clear and effective metadata standards, validation and conversion software, combined with promotion of best practices in metadata implementation, FAANG aims to maximise effectiveness and inter‐comparability of assay data. This supports the community to create a rich genome‐to‐phenotype resource and promotes continuing improvements in animal data standards as a whole.
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spelling pubmed-63341672019-01-23 FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community Harrison, P. W. Fan, J. Richardson, D. Clarke, L. Zerbino, D. Cochrane, G. Archibald, A. L. Schmidt, C. J. Flicek, P. Anim Genet Articles The Functional Annotation of ANimal Genomes (FAANG) project aims, through a coordinated international effort, to provide high quality functional annotation of animal genomes with an initial focus on farmed and companion animals. A key goal of the initiative is to ensure high quality and rich supporting metadata to describe the project's animals, specimens, cell cultures and experimental assays. By defining rich sample and experimental metadata standards and promoting best practices in data descriptions, deposition and openness, FAANG champions higher quality and reusability of published datasets. FAANG has established a Data Coordination Centre, which sits at the heart of the Metadata and Data Sharing Committee. It continues to evolve the metadata standards, support submissions and, crucially, create powerful and accessible tools to support deposition and validation of metadata. FAANG conforms to the findable, accessible, interoperable, and reusable (FAIR) data principles, with high quality, open access and functionally interlinked data. In addition to data generated by FAANG members and specific FAANG projects, existing datasets that meet the main—or more permissive legacy—standards are incorporated into a central, focused, functional data resource portal for the entire farmed and companion animal community. Through clear and effective metadata standards, validation and conversion software, combined with promotion of best practices in metadata implementation, FAANG aims to maximise effectiveness and inter‐comparability of assay data. This supports the community to create a rich genome‐to‐phenotype resource and promotes continuing improvements in animal data standards as a whole. John Wiley and Sons Inc. 2018-10-12 2018-12 /pmc/articles/PMC6334167/ /pubmed/30311252 http://dx.doi.org/10.1111/age.12736 Text en © 2018 The Authors. Animal Genetics published by John Wiley & Sons Ltd on behalf of Stichting International Foundation for Animal Genetics This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Articles
Harrison, P. W.
Fan, J.
Richardson, D.
Clarke, L.
Zerbino, D.
Cochrane, G.
Archibald, A. L.
Schmidt, C. J.
Flicek, P.
FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community
title FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community
title_full FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community
title_fullStr FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community
title_full_unstemmed FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community
title_short FAANG, establishing metadata standards, validation and best practices for the farmed and companion animal community
title_sort faang, establishing metadata standards, validation and best practices for the farmed and companion animal community
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6334167/
https://www.ncbi.nlm.nih.gov/pubmed/30311252
http://dx.doi.org/10.1111/age.12736
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