Cargando…

Data on PAGE analysis and MD simulation for the interaction of endonuclease Apn1 from Saccharomyces cerevisiae with DNA substrates containing 5,6-dihydrouracyl and 2-aminopurine

This article presents new data on nucleotide incision repair (NIR) activity of apurinic/apyrimidinic endonuclease Apn1 of Saccharomyces cerevisiae, which is known as a key player of the base excision DNA repair (BER) pathway, see “Yeast structural gene (APN1) for the major apurinic endonuclease: hom...

Descripción completa

Detalles Bibliográficos
Autores principales:	Dyakonova, Elena S., Koval, Vladimir V., Lomzov, Alexander A., Ishchenko, Alexander A., Fedorova, Olga S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Elsevier 2018
Materias:	Biochemistry, Genetics and Molecular Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6334592/ https://www.ncbi.nlm.nih.gov/pubmed/30671502 http://dx.doi.org/10.1016/j.dib.2018.09.007

Ejemplares similares

Kinetic Features of 3′–5′–Exonuclease Activity of Apurinic/Apyrimidinic Endonuclease Apn2 from Saccharomyces cerevisiae
por: Kuznetsova, Aleksandra A., et al.
Publicado: (2022)

Malleable ribonucleoprotein machine: protein intrinsic disorder in the Saccharomyces cerevisiae spliceosome
por: Coelho Ribeiro, Maria de Lourdes, et al.
Publicado: (2013)

Purification of the Cystic Fibrosis Transmembrane Conductance Regulator Protein Expressed in Saccharomyces cerevisiae
por: Pollock, Naomi, et al.
Publicado: (2014)

Quantitative proteomics reveal proteins enriched in tubular endoplasmic reticulum of Saccharomyces cerevisiae
por: Wang, Xinbo, et al.
Publicado: (2017)

Lys98 Substitution in Human AP Endonuclease 1 Affects the Kinetic Mechanism of Enzyme Action in Base Excision and Nucleotide Incision Repair Pathways
por: Timofeyeva, Nadezhda A., et al.
Publicado: (2011)

Apn1 and Apn2 endonucleases prevent accumulation of repair-associated DNA breaks in budding yeast as revealed by direct chromosomal analysis
por: Ma, Wenjian, et al.
Publicado: (2008)

The target of the DEAH-box NTP triphosphatase Prp43 in Saccharomyces cerevisiae spliceosomes is the U2 snRNP-intron interaction
por: Fourmann, Jean-Baptiste, et al.
Publicado: (2016)

Expression, purification, crystallization and preliminary X-ray crystallographic studies of a mitochondrial membrane-associated protein Cbs2 from Saccharomyces cerevisiae
por: Wu, Dan, et al.
Publicado: (2021)

Single-molecule FRET unveils induced-fit mechanism for substrate selectivity in flap endonuclease 1
por: Rashid, Fahad, et al.
Publicado: (2017)

Resolving Affinity Purified Protein Complexes by Blue Native PAGE and Protein Correlation Profiling
por: Pardo, Mercedes, et al.
Publicado: (2017)

Improvement of ethanol production by ethanol-tolerant Saccharomyces cerevisiae UVNR56
por: Thammasittirong, Sutticha Na-Ranong, et al.
Publicado: (2013)

Comparative Analysis of Exo- and Endonuclease Activities of APE1-like Enzymes
por: Davletgildeeva, Anastasiia T., et al.
Publicado: (2022)

Preparation and Delivery of Protein Microcrystals in Lipidic Cubic Phase for Serial Femtosecond Crystallography
por: Ishchenko, Andrii, et al.
Publicado: (2016)

Genetic and Biochemical Characterization of Human AP Endonuclease 1 Mutants Deficient in Nucleotide Incision Repair Activity
por: Gelin, Aurore, et al.
Publicado: (2010)

Common Kinetic Mechanism of Abasic Site Recognition by Structurally Different Apurinic/Apyrimidinic Endonucleases
por: Kuznetsova, Alexandra A., et al.
Publicado: (2021)

Expanding the genome editing toolbox of Saccharomyces cerevisiae with the endonuclease ErCas12a
por: Bennis, Nicole X, et al.
Publicado: (2023)

Identification of protein complexes with quantitative proteomics in S. cerevisiae
por: Chao, Jesse Tzu-Cheng, et al.
Publicado: (2009)

The Kinetic Mechanism of 3′-5′ Exonucleolytic Activity of AP Endonuclease Nfo from E. coli
por: Senchurova, Svetlana I., et al.
Publicado: (2022)

Apn1 AP-endonuclease is essential for the repair of oxidatively damaged DNA bases in yeast frataxin-deficient cells
por: Lefevre, Sophie, et al.
Publicado: (2012)

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
por: Heuer, André, et al.
Publicado: (2017)

Periprotein lipidomes of Saccharomyces cerevisiae provide a flexible environment for conformational changes of membrane proteins
por: van 't Klooster, Joury S, et al.
Publicado: (2020)

The effect of APN, hs-CRP and APN/hs-CRP in periodontitis with DAA
por: Cheng, Rui, et al.
Publicado: (2023)

Saccharomyces cerevisiae Mus81-Mms4 is a catalytic, DNA structure-selective endonuclease
por: Ehmsen, Kirk Tevebaugh, et al.
Publicado: (2008)

Multi-step recognition of potential 5' splice sites by the Saccharomyces cerevisiae U1 snRNP
por: Hansen, Sarah R, et al.
Publicado: (2022)

Saccharomyces cerevisiae DJ-1 paralogs maintain genome integrity through glycation repair of nucleic acids and proteins
por: Susarla, Gautam, et al.
Publicado: (2023)

Analyses of rRNA gene chromatin in cell cycle arrested Saccharomyces cerevisiae cells
por: Paillé, Audrey, et al.
Publicado: (2019)

Abasic site–peptide cross-links are blocking lesions repaired by AP endonucleases
por: Yudkina, Anna V, et al.
Publicado: (2023)

Quantitation and Analysis of the Formation of HO-Endonuclease Stimulated Chromosomal Translocations by Single-Strand Annealing in Saccharomyces cerevisiae
por: Liddell, Lauren, et al.
Publicado: (2011)

Activation of Saccharomyces cerevisiae Mlh1-Pms1 Endonuclease in a Reconstituted Mismatch Repair System
por: Smith, Catherine E., et al.
Publicado: (2015)

Single-step purification of intrinsic protein complexes in Saccharomyces cerevisiae using regenerable calmodulin resin
por: Bhojoo, Urvi, et al.
Publicado: (2018)

Influence of the Solvent on the Stability of Aminopurine Tautomers and Properties of the Amino Group
por: Jezuita, Anna, et al.
Publicado: (2023)

G-quadruplex structure and stability illuminated by 2-aminopurine phasor plots
por: Buscaglia, Robert, et al.
Publicado: (2012)

Improved dsRNA isolation and purification method validated by viral dsRNA detection using novel primers in Saccharomyces cerevisiae
por: Cardoso, Fernando M.H., et al.
Publicado: (2023)

Nucleotide flipping by restriction enzymes analyzed by 2-aminopurine steady-state fluorescence
por: Tamulaitis, Gintautas, et al.
Publicado: (2007)

High-Throughput Exonuclease Assay Based on the Fluorescent Base Analogue 2-Aminopurine
por: Botto, Margherita M., et al.
Publicado: (2023)

Characterization of biochemical properties of an apurinic/apyrimidinic endonuclease from Helicobacter pylori
por: Turgimbayeva, Aigerim, et al.
Publicado: (2018)

LEAR MD Report: Results from the 5,6 and 7-04-91 MD
por: Chanel, Μ, et al.
Publicado: (1991)

Neo-functionalization in Saccharomyces cerevisiae: a novel Nrg1-Rtg3 chimeric transcriptional modulator is essential to maintain mitochondrial DNA integrity
por: Campero-Basaldua, Carlos, et al.
Publicado: (2023)

The Role of the Ectopeptidase APN/CD13 in Cancer
por: Lendeckel, Uwe, et al.
Publicado: (2023)

Probing dynamics of HIV-1 nucleocapsid protein/target hexanucleotide complexes by 2-aminopurine
por: Avilov, S. V., et al.
Publicado: (2008)

Cannot write session to /tmp/vufind_sessions/sess_ef6crs1rpf8vsm9vb86mh5du38