Cargando…

The Medical Genome Reference Bank: a whole-genome data resource of 4000 healthy elderly individuals. Rationale and cohort design

Allele frequency data from human reference populations is of increasing value for the filtering, interpretation, and assignment of pathogenicity to genetic variants. Aged and healthy populations are more likely to be selectively depleted of pathogenic alleles and therefore particularly suitable as a...

Descripción completa

Detalles Bibliográficos
Autores principales: Lacaze, Paul, Pinese, Mark, Kaplan, Warren, Stone, Andrew, Brion, Marie-Jo, Woods, Robyn L., McNamara, Martin, McNeil, John J., Dinger, Marcel E., Thomas, David M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336775/
https://www.ncbi.nlm.nih.gov/pubmed/30353151
http://dx.doi.org/10.1038/s41431-018-0279-z
_version_ 1783388114407915520
author Lacaze, Paul
Pinese, Mark
Kaplan, Warren
Stone, Andrew
Brion, Marie-Jo
Woods, Robyn L.
McNamara, Martin
McNeil, John J.
Dinger, Marcel E.
Thomas, David M.
author_facet Lacaze, Paul
Pinese, Mark
Kaplan, Warren
Stone, Andrew
Brion, Marie-Jo
Woods, Robyn L.
McNamara, Martin
McNeil, John J.
Dinger, Marcel E.
Thomas, David M.
author_sort Lacaze, Paul
collection PubMed
description Allele frequency data from human reference populations is of increasing value for the filtering, interpretation, and assignment of pathogenicity to genetic variants. Aged and healthy populations are more likely to be selectively depleted of pathogenic alleles and therefore particularly suitable as a reference population for the major diseases of clinical and public health importance. However, reference studies of confirmed healthy elderly individuals have remained under-represented in human genetics. Here we describe the Medical Genome Reference Bank (MGRB), a large-scale comprehensive whole-genome data set of healthy elderly individuals. The MGRB provides an accessible data resource for health-related research and clinical genetics and a powerful platform for studying the genetics of healthy ageing. The MGRB is comprised of 4000 healthy, older individuals, mostly of European descent, recruited from two Australian community-based cohorts. Each participant lived ≥70 years with no reported history of cancer, cardiovascular disease, or dementia. DNA derived from blood samples has been subject to whole-genome sequencing. The MGRB has committed to a policy of data sharing, employing a hierarchical data management system to maintain participant privacy and confidentiality, while maximising research and clinical usage of the database. The MGRB represents a resource of international significance, which will be made broadly accessible to the clinical and genetic research community.
format Online
Article
Text
id pubmed-6336775
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Springer International Publishing
record_format MEDLINE/PubMed
spelling pubmed-63367752019-01-18 The Medical Genome Reference Bank: a whole-genome data resource of 4000 healthy elderly individuals. Rationale and cohort design Lacaze, Paul Pinese, Mark Kaplan, Warren Stone, Andrew Brion, Marie-Jo Woods, Robyn L. McNamara, Martin McNeil, John J. Dinger, Marcel E. Thomas, David M. Eur J Hum Genet Article Allele frequency data from human reference populations is of increasing value for the filtering, interpretation, and assignment of pathogenicity to genetic variants. Aged and healthy populations are more likely to be selectively depleted of pathogenic alleles and therefore particularly suitable as a reference population for the major diseases of clinical and public health importance. However, reference studies of confirmed healthy elderly individuals have remained under-represented in human genetics. Here we describe the Medical Genome Reference Bank (MGRB), a large-scale comprehensive whole-genome data set of healthy elderly individuals. The MGRB provides an accessible data resource for health-related research and clinical genetics and a powerful platform for studying the genetics of healthy ageing. The MGRB is comprised of 4000 healthy, older individuals, mostly of European descent, recruited from two Australian community-based cohorts. Each participant lived ≥70 years with no reported history of cancer, cardiovascular disease, or dementia. DNA derived from blood samples has been subject to whole-genome sequencing. The MGRB has committed to a policy of data sharing, employing a hierarchical data management system to maintain participant privacy and confidentiality, while maximising research and clinical usage of the database. The MGRB represents a resource of international significance, which will be made broadly accessible to the clinical and genetic research community. Springer International Publishing 2018-10-24 2019-02 /pmc/articles/PMC6336775/ /pubmed/30353151 http://dx.doi.org/10.1038/s41431-018-0279-z Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Lacaze, Paul
Pinese, Mark
Kaplan, Warren
Stone, Andrew
Brion, Marie-Jo
Woods, Robyn L.
McNamara, Martin
McNeil, John J.
Dinger, Marcel E.
Thomas, David M.
The Medical Genome Reference Bank: a whole-genome data resource of 4000 healthy elderly individuals. Rationale and cohort design
title The Medical Genome Reference Bank: a whole-genome data resource of 4000 healthy elderly individuals. Rationale and cohort design
title_full The Medical Genome Reference Bank: a whole-genome data resource of 4000 healthy elderly individuals. Rationale and cohort design
title_fullStr The Medical Genome Reference Bank: a whole-genome data resource of 4000 healthy elderly individuals. Rationale and cohort design
title_full_unstemmed The Medical Genome Reference Bank: a whole-genome data resource of 4000 healthy elderly individuals. Rationale and cohort design
title_short The Medical Genome Reference Bank: a whole-genome data resource of 4000 healthy elderly individuals. Rationale and cohort design
title_sort medical genome reference bank: a whole-genome data resource of 4000 healthy elderly individuals. rationale and cohort design
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336775/
https://www.ncbi.nlm.nih.gov/pubmed/30353151
http://dx.doi.org/10.1038/s41431-018-0279-z
work_keys_str_mv AT lacazepaul themedicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT pinesemark themedicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT kaplanwarren themedicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT stoneandrew themedicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT brionmariejo themedicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT woodsrobynl themedicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT mcnamaramartin themedicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT mcneiljohnj themedicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT dingermarcele themedicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT thomasdavidm themedicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT lacazepaul medicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT pinesemark medicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT kaplanwarren medicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT stoneandrew medicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT brionmariejo medicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT woodsrobynl medicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT mcnamaramartin medicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT mcneiljohnj medicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT dingermarcele medicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign
AT thomasdavidm medicalgenomereferencebankawholegenomedataresourceof4000healthyelderlyindividualsrationaleandcohortdesign