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Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean
Heat shock transcription factors (Hsfs) are essential elements in plant signal transduction pathways that mediate gene expression in response to various abiotic stresses. Mungbean (Vigna radiata) is an important crop worldwide. The emergence of a genome database now allows for functional analysis of...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336897/ https://www.ncbi.nlm.nih.gov/pubmed/30687395 http://dx.doi.org/10.3389/fgene.2018.00736 |
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author | Li, Shuai Wang, Runhao Jin, Hanqi Ding, Yanhua Cai, Chunmei |
author_facet | Li, Shuai Wang, Runhao Jin, Hanqi Ding, Yanhua Cai, Chunmei |
author_sort | Li, Shuai |
collection | PubMed |
description | Heat shock transcription factors (Hsfs) are essential elements in plant signal transduction pathways that mediate gene expression in response to various abiotic stresses. Mungbean (Vigna radiata) is an important crop worldwide. The emergence of a genome database now allows for functional analysis of mungbean genes. In this study, we dissect the mungbean Hsfs using genome-wide identification and expression profiles. We characterized a total of 24 VrHsf genes and classified them into three groups (A, B, and C) based on their phylogeny and conserved domain structures. All VrHsf genes exhibit highly conserved exon-intron organization, with two exons and one intron. In addition, all VrHsf proteins contain 16 distinct motifs. Chromosome location analysis revealed that VrHsf genes are located on 8 of the 11 mungbean chromosomes, and that seven duplicated gene pairs had formed among them. Moreover, transcription patterns of VrHsf genes varied in different tissues, indicating their different roles in plant growth and development. We identified multiple stress related cis-elements in VrHsf promoter regions 2 kb upstream of the translation initiation codons, and the expression of most VrHsf genes was altered under different stress conditions, suggesting their potential functions in stress resistance pathways. These molecular characterization and expression profile analyses of VrHsf genes provide essential information for further function investigation. |
format | Online Article Text |
id | pubmed-6336897 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-63368972019-01-25 Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean Li, Shuai Wang, Runhao Jin, Hanqi Ding, Yanhua Cai, Chunmei Front Genet Genetics Heat shock transcription factors (Hsfs) are essential elements in plant signal transduction pathways that mediate gene expression in response to various abiotic stresses. Mungbean (Vigna radiata) is an important crop worldwide. The emergence of a genome database now allows for functional analysis of mungbean genes. In this study, we dissect the mungbean Hsfs using genome-wide identification and expression profiles. We characterized a total of 24 VrHsf genes and classified them into three groups (A, B, and C) based on their phylogeny and conserved domain structures. All VrHsf genes exhibit highly conserved exon-intron organization, with two exons and one intron. In addition, all VrHsf proteins contain 16 distinct motifs. Chromosome location analysis revealed that VrHsf genes are located on 8 of the 11 mungbean chromosomes, and that seven duplicated gene pairs had formed among them. Moreover, transcription patterns of VrHsf genes varied in different tissues, indicating their different roles in plant growth and development. We identified multiple stress related cis-elements in VrHsf promoter regions 2 kb upstream of the translation initiation codons, and the expression of most VrHsf genes was altered under different stress conditions, suggesting their potential functions in stress resistance pathways. These molecular characterization and expression profile analyses of VrHsf genes provide essential information for further function investigation. Frontiers Media S.A. 2019-01-11 /pmc/articles/PMC6336897/ /pubmed/30687395 http://dx.doi.org/10.3389/fgene.2018.00736 Text en Copyright © 2019 Li, Wang, Jin, Ding and Cai. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Li, Shuai Wang, Runhao Jin, Hanqi Ding, Yanhua Cai, Chunmei Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean |
title | Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean |
title_full | Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean |
title_fullStr | Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean |
title_full_unstemmed | Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean |
title_short | Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean |
title_sort | molecular characterization and expression profile analysis of heat shock transcription factors in mungbean |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336897/ https://www.ncbi.nlm.nih.gov/pubmed/30687395 http://dx.doi.org/10.3389/fgene.2018.00736 |
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