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Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean

Heat shock transcription factors (Hsfs) are essential elements in plant signal transduction pathways that mediate gene expression in response to various abiotic stresses. Mungbean (Vigna radiata) is an important crop worldwide. The emergence of a genome database now allows for functional analysis of...

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Autores principales: Li, Shuai, Wang, Runhao, Jin, Hanqi, Ding, Yanhua, Cai, Chunmei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336897/
https://www.ncbi.nlm.nih.gov/pubmed/30687395
http://dx.doi.org/10.3389/fgene.2018.00736
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author Li, Shuai
Wang, Runhao
Jin, Hanqi
Ding, Yanhua
Cai, Chunmei
author_facet Li, Shuai
Wang, Runhao
Jin, Hanqi
Ding, Yanhua
Cai, Chunmei
author_sort Li, Shuai
collection PubMed
description Heat shock transcription factors (Hsfs) are essential elements in plant signal transduction pathways that mediate gene expression in response to various abiotic stresses. Mungbean (Vigna radiata) is an important crop worldwide. The emergence of a genome database now allows for functional analysis of mungbean genes. In this study, we dissect the mungbean Hsfs using genome-wide identification and expression profiles. We characterized a total of 24 VrHsf genes and classified them into three groups (A, B, and C) based on their phylogeny and conserved domain structures. All VrHsf genes exhibit highly conserved exon-intron organization, with two exons and one intron. In addition, all VrHsf proteins contain 16 distinct motifs. Chromosome location analysis revealed that VrHsf genes are located on 8 of the 11 mungbean chromosomes, and that seven duplicated gene pairs had formed among them. Moreover, transcription patterns of VrHsf genes varied in different tissues, indicating their different roles in plant growth and development. We identified multiple stress related cis-elements in VrHsf promoter regions 2 kb upstream of the translation initiation codons, and the expression of most VrHsf genes was altered under different stress conditions, suggesting their potential functions in stress resistance pathways. These molecular characterization and expression profile analyses of VrHsf genes provide essential information for further function investigation.
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spelling pubmed-63368972019-01-25 Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean Li, Shuai Wang, Runhao Jin, Hanqi Ding, Yanhua Cai, Chunmei Front Genet Genetics Heat shock transcription factors (Hsfs) are essential elements in plant signal transduction pathways that mediate gene expression in response to various abiotic stresses. Mungbean (Vigna radiata) is an important crop worldwide. The emergence of a genome database now allows for functional analysis of mungbean genes. In this study, we dissect the mungbean Hsfs using genome-wide identification and expression profiles. We characterized a total of 24 VrHsf genes and classified them into three groups (A, B, and C) based on their phylogeny and conserved domain structures. All VrHsf genes exhibit highly conserved exon-intron organization, with two exons and one intron. In addition, all VrHsf proteins contain 16 distinct motifs. Chromosome location analysis revealed that VrHsf genes are located on 8 of the 11 mungbean chromosomes, and that seven duplicated gene pairs had formed among them. Moreover, transcription patterns of VrHsf genes varied in different tissues, indicating their different roles in plant growth and development. We identified multiple stress related cis-elements in VrHsf promoter regions 2 kb upstream of the translation initiation codons, and the expression of most VrHsf genes was altered under different stress conditions, suggesting their potential functions in stress resistance pathways. These molecular characterization and expression profile analyses of VrHsf genes provide essential information for further function investigation. Frontiers Media S.A. 2019-01-11 /pmc/articles/PMC6336897/ /pubmed/30687395 http://dx.doi.org/10.3389/fgene.2018.00736 Text en Copyright © 2019 Li, Wang, Jin, Ding and Cai. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Li, Shuai
Wang, Runhao
Jin, Hanqi
Ding, Yanhua
Cai, Chunmei
Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean
title Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean
title_full Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean
title_fullStr Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean
title_full_unstemmed Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean
title_short Molecular Characterization and Expression Profile Analysis of Heat Shock Transcription Factors in Mungbean
title_sort molecular characterization and expression profile analysis of heat shock transcription factors in mungbean
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336897/
https://www.ncbi.nlm.nih.gov/pubmed/30687395
http://dx.doi.org/10.3389/fgene.2018.00736
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