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Machine Learning Models for Multiparametric Glioma Grading With Quantitative Result Interpretations

Gliomas are the most common primary malignant brain tumors in adults. Accurate grading is crucial as therapeutic strategies are often disparate for different grades and may influence patient prognosis. This study aims to provide an automated glioma grading platform on the basis of machine learning m...

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Autores principales: Wang, Xiuying, Wang, Dingqian, Yao, Zhigang, Xin, Bowen, Wang, Bao, Lan, Chuanjin, Qin, Yejun, Xu, Shangchen, He, Dazhong, Liu, Yingchao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6337068/
https://www.ncbi.nlm.nih.gov/pubmed/30686996
http://dx.doi.org/10.3389/fnins.2018.01046
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author Wang, Xiuying
Wang, Dingqian
Yao, Zhigang
Xin, Bowen
Wang, Bao
Lan, Chuanjin
Qin, Yejun
Xu, Shangchen
He, Dazhong
Liu, Yingchao
author_facet Wang, Xiuying
Wang, Dingqian
Yao, Zhigang
Xin, Bowen
Wang, Bao
Lan, Chuanjin
Qin, Yejun
Xu, Shangchen
He, Dazhong
Liu, Yingchao
author_sort Wang, Xiuying
collection PubMed
description Gliomas are the most common primary malignant brain tumors in adults. Accurate grading is crucial as therapeutic strategies are often disparate for different grades and may influence patient prognosis. This study aims to provide an automated glioma grading platform on the basis of machine learning models. In this paper, we investigate contributions of multi-parameters from multimodal data including imaging parameters or features from the Whole Slide images (WSI) and the proliferation marker Ki-67 for automated brain tumor grading. For each WSI, we extract both visual parameters such as morphology parameters and sub-visual parameters including first-order and second-order features. On the basis of machine learning models, our platform classifies gliomas into grades II, III, and IV. Furthermore, we quantitatively interpret and reveal the important parameters contributing to grading with the Local Interpretable Model-Agnostic Explanations (LIME) algorithm. The quantitative analysis and explanation may assist clinicians to better understand the disease and accordingly to choose optimal treatments for improving clinical outcomes. The performance of our grading model was evaluated with cross-validation, which randomly divided the patients into non-overlapping training and testing sets and repeatedly validated the model on the different testing sets. The primary results indicated that this modular platform approach achieved the highest grading accuracy of 0.90 ± 0.04 with support vector machine (SVM) algorithm, with grading accuracies of 0.91 ± 0.08, 0.90 ± 0.08, and 0.90 ± 0.07 for grade II, III, and IV gliomas, respectively.
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spelling pubmed-63370682019-01-25 Machine Learning Models for Multiparametric Glioma Grading With Quantitative Result Interpretations Wang, Xiuying Wang, Dingqian Yao, Zhigang Xin, Bowen Wang, Bao Lan, Chuanjin Qin, Yejun Xu, Shangchen He, Dazhong Liu, Yingchao Front Neurosci Neuroscience Gliomas are the most common primary malignant brain tumors in adults. Accurate grading is crucial as therapeutic strategies are often disparate for different grades and may influence patient prognosis. This study aims to provide an automated glioma grading platform on the basis of machine learning models. In this paper, we investigate contributions of multi-parameters from multimodal data including imaging parameters or features from the Whole Slide images (WSI) and the proliferation marker Ki-67 for automated brain tumor grading. For each WSI, we extract both visual parameters such as morphology parameters and sub-visual parameters including first-order and second-order features. On the basis of machine learning models, our platform classifies gliomas into grades II, III, and IV. Furthermore, we quantitatively interpret and reveal the important parameters contributing to grading with the Local Interpretable Model-Agnostic Explanations (LIME) algorithm. The quantitative analysis and explanation may assist clinicians to better understand the disease and accordingly to choose optimal treatments for improving clinical outcomes. The performance of our grading model was evaluated with cross-validation, which randomly divided the patients into non-overlapping training and testing sets and repeatedly validated the model on the different testing sets. The primary results indicated that this modular platform approach achieved the highest grading accuracy of 0.90 ± 0.04 with support vector machine (SVM) algorithm, with grading accuracies of 0.91 ± 0.08, 0.90 ± 0.08, and 0.90 ± 0.07 for grade II, III, and IV gliomas, respectively. Frontiers Media S.A. 2019-01-11 /pmc/articles/PMC6337068/ /pubmed/30686996 http://dx.doi.org/10.3389/fnins.2018.01046 Text en Copyright © 2019 Wang, Wang, Yao, Xin, Wang, Lan, Qin, Xu, He and Liu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Wang, Xiuying
Wang, Dingqian
Yao, Zhigang
Xin, Bowen
Wang, Bao
Lan, Chuanjin
Qin, Yejun
Xu, Shangchen
He, Dazhong
Liu, Yingchao
Machine Learning Models for Multiparametric Glioma Grading With Quantitative Result Interpretations
title Machine Learning Models for Multiparametric Glioma Grading With Quantitative Result Interpretations
title_full Machine Learning Models for Multiparametric Glioma Grading With Quantitative Result Interpretations
title_fullStr Machine Learning Models for Multiparametric Glioma Grading With Quantitative Result Interpretations
title_full_unstemmed Machine Learning Models for Multiparametric Glioma Grading With Quantitative Result Interpretations
title_short Machine Learning Models for Multiparametric Glioma Grading With Quantitative Result Interpretations
title_sort machine learning models for multiparametric glioma grading with quantitative result interpretations
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6337068/
https://www.ncbi.nlm.nih.gov/pubmed/30686996
http://dx.doi.org/10.3389/fnins.2018.01046
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