Cargando…

The Role of COL5A2 in Patients With Muscle-Invasive Bladder Cancer: A Bioinformatics Analysis of Public Datasets Involving 787 Subjects and 29 Cell Lines

Bladder cancer (BC) is one of the most common malignancies. Two previous studies identified collagen type V alpha 2 (COL5A2) as a potential biomarker in BC, both are simple reanalysis of a single transcriptomic dataset without subgroup analysis for muscle-invasive BC (MIBC). We focused in MIBC patie...

Descripción completa

Detalles Bibliográficos
Autores principales: Meng, Xiang-Yu, Shi, Ming-Jun, Zeng, Zi-Hang, Chen, Chen, Liu, Tong-Zu, Wu, Qiu-Ji, Li, Shuo, Li, Sheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6340941/
https://www.ncbi.nlm.nih.gov/pubmed/30697528
http://dx.doi.org/10.3389/fonc.2018.00659
_version_ 1783388860100640768
author Meng, Xiang-Yu
Shi, Ming-Jun
Zeng, Zi-Hang
Chen, Chen
Liu, Tong-Zu
Wu, Qiu-Ji
Li, Shuo
Li, Sheng
author_facet Meng, Xiang-Yu
Shi, Ming-Jun
Zeng, Zi-Hang
Chen, Chen
Liu, Tong-Zu
Wu, Qiu-Ji
Li, Shuo
Li, Sheng
author_sort Meng, Xiang-Yu
collection PubMed
description Bladder cancer (BC) is one of the most common malignancies. Two previous studies identified collagen type V alpha 2 (COL5A2) as a potential biomarker in BC, both are simple reanalysis of a single transcriptomic dataset without subgroup analysis for muscle-invasive BC (MIBC). We focused in MIBC patients and explored the role of COL5A2 from an integration perspective, using refined methodology covering individual participant data meta-analysis and bioinformatics analysis. Eight transcriptomic datasets of 787 MIBC patients (including one dataset containing genomic mutation information) and two drug sensitivity datasets of 29 cell lines in which more than 250 compounds were analyzed. We found subjects with increased COL5A2 gene expression exhibited poorer prognosis, and the power analysis confirmed adequate sample size. FGFR3 was the only gene differential mutated between the COL5A2 high and low expression groups. Differential expression and co-expression network analysis suggested potential association between COL5A2 expression and essential pathways involved in cancer invasion and dissemination, including cell adhesion, extracellular matrix organization, and epithelial-mesenchymal transition. Coordinately, analysis of drug screening datasets and gene-drug interaction also revealed COL5A2 expression linked to cell morphogenesis, angiogenesis, blood vessel development, and urogenital development. The utility and feasibility of COL5A2 for clinically applicable prognosis prediction and risk classification and the exact underlying molecular mechanism should be further investigated in subsequent studies.
format Online
Article
Text
id pubmed-6340941
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-63409412019-01-29 The Role of COL5A2 in Patients With Muscle-Invasive Bladder Cancer: A Bioinformatics Analysis of Public Datasets Involving 787 Subjects and 29 Cell Lines Meng, Xiang-Yu Shi, Ming-Jun Zeng, Zi-Hang Chen, Chen Liu, Tong-Zu Wu, Qiu-Ji Li, Shuo Li, Sheng Front Oncol Oncology Bladder cancer (BC) is one of the most common malignancies. Two previous studies identified collagen type V alpha 2 (COL5A2) as a potential biomarker in BC, both are simple reanalysis of a single transcriptomic dataset without subgroup analysis for muscle-invasive BC (MIBC). We focused in MIBC patients and explored the role of COL5A2 from an integration perspective, using refined methodology covering individual participant data meta-analysis and bioinformatics analysis. Eight transcriptomic datasets of 787 MIBC patients (including one dataset containing genomic mutation information) and two drug sensitivity datasets of 29 cell lines in which more than 250 compounds were analyzed. We found subjects with increased COL5A2 gene expression exhibited poorer prognosis, and the power analysis confirmed adequate sample size. FGFR3 was the only gene differential mutated between the COL5A2 high and low expression groups. Differential expression and co-expression network analysis suggested potential association between COL5A2 expression and essential pathways involved in cancer invasion and dissemination, including cell adhesion, extracellular matrix organization, and epithelial-mesenchymal transition. Coordinately, analysis of drug screening datasets and gene-drug interaction also revealed COL5A2 expression linked to cell morphogenesis, angiogenesis, blood vessel development, and urogenital development. The utility and feasibility of COL5A2 for clinically applicable prognosis prediction and risk classification and the exact underlying molecular mechanism should be further investigated in subsequent studies. Frontiers Media S.A. 2019-01-15 /pmc/articles/PMC6340941/ /pubmed/30697528 http://dx.doi.org/10.3389/fonc.2018.00659 Text en Copyright © 2019 Meng, Shi, Zeng, Chen, Liu, Wu, Li and Li. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Meng, Xiang-Yu
Shi, Ming-Jun
Zeng, Zi-Hang
Chen, Chen
Liu, Tong-Zu
Wu, Qiu-Ji
Li, Shuo
Li, Sheng
The Role of COL5A2 in Patients With Muscle-Invasive Bladder Cancer: A Bioinformatics Analysis of Public Datasets Involving 787 Subjects and 29 Cell Lines
title The Role of COL5A2 in Patients With Muscle-Invasive Bladder Cancer: A Bioinformatics Analysis of Public Datasets Involving 787 Subjects and 29 Cell Lines
title_full The Role of COL5A2 in Patients With Muscle-Invasive Bladder Cancer: A Bioinformatics Analysis of Public Datasets Involving 787 Subjects and 29 Cell Lines
title_fullStr The Role of COL5A2 in Patients With Muscle-Invasive Bladder Cancer: A Bioinformatics Analysis of Public Datasets Involving 787 Subjects and 29 Cell Lines
title_full_unstemmed The Role of COL5A2 in Patients With Muscle-Invasive Bladder Cancer: A Bioinformatics Analysis of Public Datasets Involving 787 Subjects and 29 Cell Lines
title_short The Role of COL5A2 in Patients With Muscle-Invasive Bladder Cancer: A Bioinformatics Analysis of Public Datasets Involving 787 Subjects and 29 Cell Lines
title_sort role of col5a2 in patients with muscle-invasive bladder cancer: a bioinformatics analysis of public datasets involving 787 subjects and 29 cell lines
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6340941/
https://www.ncbi.nlm.nih.gov/pubmed/30697528
http://dx.doi.org/10.3389/fonc.2018.00659
work_keys_str_mv AT mengxiangyu theroleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT shimingjun theroleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT zengzihang theroleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT chenchen theroleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT liutongzu theroleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT wuqiuji theroleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT lishuo theroleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT lisheng theroleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT mengxiangyu roleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT shimingjun roleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT zengzihang roleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT chenchen roleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT liutongzu roleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT wuqiuji roleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT lishuo roleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines
AT lisheng roleofcol5a2inpatientswithmuscleinvasivebladdercancerabioinformaticsanalysisofpublicdatasetsinvolving787subjectsand29celllines