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Biodiversity of fungi in hot desert sands
The fungal community of six sand samples from Saudi Arabia and Jordan deserts was characterized by culture‐independent analysis via next generation sequencing of the 18S rRNA genes and by culture‐dependent methods followed by sequencing of internal transcribed spacer (ITS) region. By 18S sequencing...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6341031/ https://www.ncbi.nlm.nih.gov/pubmed/29504263 http://dx.doi.org/10.1002/mbo3.595 |
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author | Murgia, Manuela Fiamma, Maura Barac, Aleksandra Deligios, Massimo Mazzarello, Vittorio Paglietti, Bianca Cappuccinelli, Pietro Al‐Qahtani, Ahmed Squartini, Andrea Rubino, Salvatore Al‐Ahdal, Mohammed N. |
author_facet | Murgia, Manuela Fiamma, Maura Barac, Aleksandra Deligios, Massimo Mazzarello, Vittorio Paglietti, Bianca Cappuccinelli, Pietro Al‐Qahtani, Ahmed Squartini, Andrea Rubino, Salvatore Al‐Ahdal, Mohammed N. |
author_sort | Murgia, Manuela |
collection | PubMed |
description | The fungal community of six sand samples from Saudi Arabia and Jordan deserts was characterized by culture‐independent analysis via next generation sequencing of the 18S rRNA genes and by culture‐dependent methods followed by sequencing of internal transcribed spacer (ITS) region. By 18S sequencing were identified from 163 to 507 OTUs per sample, with a percentage of fungi ranging from 3.5% to 82.7%. The identified fungal Phyla were Ascomycota, Basal fungi, and Basidiomycota and the most abundant detected classes were Dothideomycetes, Pezizomycetes, and Sordariomycetes. A total of 11 colonies of filamentous fungi were isolated and cultured from six samples, and the ITS sequencing pointed toward five different species of the class Sordariomycetes, belonging to genera Fusarium (F. redolens, F. solani, F. equiseti), Chaetomium (C. madrasense), and Albifimbria (A. terrestris). The results of this study show an unexpectedly large fungal biodiversity in the Middle East desert sand and their possible role and implications on human health. |
format | Online Article Text |
id | pubmed-6341031 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-63410312019-01-24 Biodiversity of fungi in hot desert sands Murgia, Manuela Fiamma, Maura Barac, Aleksandra Deligios, Massimo Mazzarello, Vittorio Paglietti, Bianca Cappuccinelli, Pietro Al‐Qahtani, Ahmed Squartini, Andrea Rubino, Salvatore Al‐Ahdal, Mohammed N. Microbiologyopen Original Research The fungal community of six sand samples from Saudi Arabia and Jordan deserts was characterized by culture‐independent analysis via next generation sequencing of the 18S rRNA genes and by culture‐dependent methods followed by sequencing of internal transcribed spacer (ITS) region. By 18S sequencing were identified from 163 to 507 OTUs per sample, with a percentage of fungi ranging from 3.5% to 82.7%. The identified fungal Phyla were Ascomycota, Basal fungi, and Basidiomycota and the most abundant detected classes were Dothideomycetes, Pezizomycetes, and Sordariomycetes. A total of 11 colonies of filamentous fungi were isolated and cultured from six samples, and the ITS sequencing pointed toward five different species of the class Sordariomycetes, belonging to genera Fusarium (F. redolens, F. solani, F. equiseti), Chaetomium (C. madrasense), and Albifimbria (A. terrestris). The results of this study show an unexpectedly large fungal biodiversity in the Middle East desert sand and their possible role and implications on human health. John Wiley and Sons Inc. 2018-03-05 /pmc/articles/PMC6341031/ /pubmed/29504263 http://dx.doi.org/10.1002/mbo3.595 Text en © 2018 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Murgia, Manuela Fiamma, Maura Barac, Aleksandra Deligios, Massimo Mazzarello, Vittorio Paglietti, Bianca Cappuccinelli, Pietro Al‐Qahtani, Ahmed Squartini, Andrea Rubino, Salvatore Al‐Ahdal, Mohammed N. Biodiversity of fungi in hot desert sands |
title | Biodiversity of fungi in hot desert sands |
title_full | Biodiversity of fungi in hot desert sands |
title_fullStr | Biodiversity of fungi in hot desert sands |
title_full_unstemmed | Biodiversity of fungi in hot desert sands |
title_short | Biodiversity of fungi in hot desert sands |
title_sort | biodiversity of fungi in hot desert sands |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6341031/ https://www.ncbi.nlm.nih.gov/pubmed/29504263 http://dx.doi.org/10.1002/mbo3.595 |
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