Cargando…
Oncogenic value of microRNA-15b-5p in hepatocellular carcinoma and a bioinformatics investigation
miR-15b-5p has frequently been reported to function as a biomarker in some malignancies; however, the function of miR-15b-5p in hepatocellular carcinoma (HCC) and its molecular mechanism are still not well understood. The present study was designed to confirm the clinical value of miR-15b-5p and fur...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
D.A. Spandidos
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6341845/ https://www.ncbi.nlm.nih.gov/pubmed/30675229 http://dx.doi.org/10.3892/ol.2018.9748 |
_version_ | 1783389024969293824 |
---|---|
author | Pan, Wen-Ya Zeng, Jiang-Hui Wen, Dong-Yue Wang, Jie-Yu Wang, Peng-Peng Chen, Gang Feng, Zhen-Bo |
author_facet | Pan, Wen-Ya Zeng, Jiang-Hui Wen, Dong-Yue Wang, Jie-Yu Wang, Peng-Peng Chen, Gang Feng, Zhen-Bo |
author_sort | Pan, Wen-Ya |
collection | PubMed |
description | miR-15b-5p has frequently been reported to function as a biomarker in some malignancies; however, the function of miR-15b-5p in hepatocellular carcinoma (HCC) and its molecular mechanism are still not well understood. The present study was designed to confirm the clinical value of miR-15b-5p and further explore its underlying molecular mechanism. A comprehensive investigation of the clinical value of miR-15b-5p in HCC was investigated by data mining The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) datasets as well as literature. In addition, intersected target genes of miR-15b-5p were predicted using the miRWalk database and differentially expressed genes of HCC from TCGA. Furthermore, gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were carried out. Then, a protein-protein interaction network (PPI) was constructed to reveal the interactions between some hub target genes of miR-15b-5p. The miR-15b-5p expression level in HCC was predominantly overexpressed compared with non-HCC tissues samples (SMD=0.618, 95% CI: 0.207, 1.029; P<0.0001) based on 991 HCC and 456 adjacent non-HCC tissue samples. The pooled summary receiver operator characteristic (SROC) of miR-15b-5p was 0.81 (Q*=0.74), and the pooled sensitivity and specificity of miR-15b-5p in HCC were 72% (95% CI: 69–75%) and 68% (95% CI: 65–72%), respectively. Bioinformatically, 225 overlapping genes were selected as prospective target genes of miR-15b-5p in HCC, and profoundly enriched GO terms and KEGG pathway investigation in silico demonstrated that the target genes were associated with prostate cancer, proximal tubule bicarbonate reclamation, heart trabecula formation, extracellular space, and interleukin-1 receptor activity. Five genes (ACACB, RIPK4, MAP2K1, TLR4 and IGF1) were defined as hub genes from the PPI network. The high expression of miR-15b-5p could play an essential part in hepatocarcinogenesis through diverse regulation approaches. |
format | Online Article Text |
id | pubmed-6341845 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | D.A. Spandidos |
record_format | MEDLINE/PubMed |
spelling | pubmed-63418452019-01-23 Oncogenic value of microRNA-15b-5p in hepatocellular carcinoma and a bioinformatics investigation Pan, Wen-Ya Zeng, Jiang-Hui Wen, Dong-Yue Wang, Jie-Yu Wang, Peng-Peng Chen, Gang Feng, Zhen-Bo Oncol Lett Articles miR-15b-5p has frequently been reported to function as a biomarker in some malignancies; however, the function of miR-15b-5p in hepatocellular carcinoma (HCC) and its molecular mechanism are still not well understood. The present study was designed to confirm the clinical value of miR-15b-5p and further explore its underlying molecular mechanism. A comprehensive investigation of the clinical value of miR-15b-5p in HCC was investigated by data mining The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) datasets as well as literature. In addition, intersected target genes of miR-15b-5p were predicted using the miRWalk database and differentially expressed genes of HCC from TCGA. Furthermore, gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were carried out. Then, a protein-protein interaction network (PPI) was constructed to reveal the interactions between some hub target genes of miR-15b-5p. The miR-15b-5p expression level in HCC was predominantly overexpressed compared with non-HCC tissues samples (SMD=0.618, 95% CI: 0.207, 1.029; P<0.0001) based on 991 HCC and 456 adjacent non-HCC tissue samples. The pooled summary receiver operator characteristic (SROC) of miR-15b-5p was 0.81 (Q*=0.74), and the pooled sensitivity and specificity of miR-15b-5p in HCC were 72% (95% CI: 69–75%) and 68% (95% CI: 65–72%), respectively. Bioinformatically, 225 overlapping genes were selected as prospective target genes of miR-15b-5p in HCC, and profoundly enriched GO terms and KEGG pathway investigation in silico demonstrated that the target genes were associated with prostate cancer, proximal tubule bicarbonate reclamation, heart trabecula formation, extracellular space, and interleukin-1 receptor activity. Five genes (ACACB, RIPK4, MAP2K1, TLR4 and IGF1) were defined as hub genes from the PPI network. The high expression of miR-15b-5p could play an essential part in hepatocarcinogenesis through diverse regulation approaches. D.A. Spandidos 2019-02 2018-11-22 /pmc/articles/PMC6341845/ /pubmed/30675229 http://dx.doi.org/10.3892/ol.2018.9748 Text en Copyright: © Pan et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Articles Pan, Wen-Ya Zeng, Jiang-Hui Wen, Dong-Yue Wang, Jie-Yu Wang, Peng-Peng Chen, Gang Feng, Zhen-Bo Oncogenic value of microRNA-15b-5p in hepatocellular carcinoma and a bioinformatics investigation |
title | Oncogenic value of microRNA-15b-5p in hepatocellular carcinoma and a bioinformatics investigation |
title_full | Oncogenic value of microRNA-15b-5p in hepatocellular carcinoma and a bioinformatics investigation |
title_fullStr | Oncogenic value of microRNA-15b-5p in hepatocellular carcinoma and a bioinformatics investigation |
title_full_unstemmed | Oncogenic value of microRNA-15b-5p in hepatocellular carcinoma and a bioinformatics investigation |
title_short | Oncogenic value of microRNA-15b-5p in hepatocellular carcinoma and a bioinformatics investigation |
title_sort | oncogenic value of microrna-15b-5p in hepatocellular carcinoma and a bioinformatics investigation |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6341845/ https://www.ncbi.nlm.nih.gov/pubmed/30675229 http://dx.doi.org/10.3892/ol.2018.9748 |
work_keys_str_mv | AT panwenya oncogenicvalueofmicrorna15b5pinhepatocellularcarcinomaandabioinformaticsinvestigation AT zengjianghui oncogenicvalueofmicrorna15b5pinhepatocellularcarcinomaandabioinformaticsinvestigation AT wendongyue oncogenicvalueofmicrorna15b5pinhepatocellularcarcinomaandabioinformaticsinvestigation AT wangjieyu oncogenicvalueofmicrorna15b5pinhepatocellularcarcinomaandabioinformaticsinvestigation AT wangpengpeng oncogenicvalueofmicrorna15b5pinhepatocellularcarcinomaandabioinformaticsinvestigation AT chengang oncogenicvalueofmicrorna15b5pinhepatocellularcarcinomaandabioinformaticsinvestigation AT fengzhenbo oncogenicvalueofmicrorna15b5pinhepatocellularcarcinomaandabioinformaticsinvestigation |