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Making sense of ultrahigh‐resolution movement data: A new algorithm for inferring sites of interest
Decomposing the life track of an animal into behavioral segments is a fundamental challenge for movement ecology. The proliferation of high‐resolution data, often collected many times per second, offers much opportunity for understanding animal movement. However, the sheer size of modern data sets m...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6342090/ https://www.ncbi.nlm.nih.gov/pubmed/30680112 http://dx.doi.org/10.1002/ece3.4721 |
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author | Munden, Rhys Börger, Luca Wilson, Rory P. Redcliffe, James Loison, Anne Garel, Mathieu Potts, Jonathan R. |
author_facet | Munden, Rhys Börger, Luca Wilson, Rory P. Redcliffe, James Loison, Anne Garel, Mathieu Potts, Jonathan R. |
author_sort | Munden, Rhys |
collection | PubMed |
description | Decomposing the life track of an animal into behavioral segments is a fundamental challenge for movement ecology. The proliferation of high‐resolution data, often collected many times per second, offers much opportunity for understanding animal movement. However, the sheer size of modern data sets means there is an increasing need for rapid, novel computational techniques to make sense of these data. Most existing methods were designed with smaller data sets in mind and can thus be prohibitively slow. Here, we introduce a method for segmenting high‐resolution movement trajectories into sites of interest and transitions between these sites. This builds on a previous algorithm of Benhamou and Riotte‐Lambert (2012). Adapting it for use with high‐resolution data. The data’s resolution removed the need to interpolate between successive locations, allowing us to increase the algorithm’s speed by approximately two orders of magnitude with essentially no drop in accuracy. Furthermore, we incorporate a color scheme for testing the level of confidence in the algorithm's inference (high = green, medium = amber, low = red). We demonstrate the speed and accuracy of our algorithm with application to both simulated and real data (Alpine cattle at 1 Hz resolution). On simulated data, our algorithm correctly identified the sites of interest for 99% of “high confidence” paths. For the cattle data, the algorithm identified the two known sites of interest: a watering hole and a milking station. It also identified several other sites which can be related to hypothesized environmental drivers (e.g., food). Our algorithm gives an efficient method for turning a long, high‐resolution movement path into a schematic representation of broadscale decisions, allowing a direct link to existing point‐to‐point analysis techniques such as optimal foraging theory. It is encoded into an R package called SitesInterest, so should serve as a valuable tool for making sense of these increasingly large data streams. |
format | Online Article Text |
id | pubmed-6342090 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-63420902019-01-24 Making sense of ultrahigh‐resolution movement data: A new algorithm for inferring sites of interest Munden, Rhys Börger, Luca Wilson, Rory P. Redcliffe, James Loison, Anne Garel, Mathieu Potts, Jonathan R. Ecol Evol Original Research Decomposing the life track of an animal into behavioral segments is a fundamental challenge for movement ecology. The proliferation of high‐resolution data, often collected many times per second, offers much opportunity for understanding animal movement. However, the sheer size of modern data sets means there is an increasing need for rapid, novel computational techniques to make sense of these data. Most existing methods were designed with smaller data sets in mind and can thus be prohibitively slow. Here, we introduce a method for segmenting high‐resolution movement trajectories into sites of interest and transitions between these sites. This builds on a previous algorithm of Benhamou and Riotte‐Lambert (2012). Adapting it for use with high‐resolution data. The data’s resolution removed the need to interpolate between successive locations, allowing us to increase the algorithm’s speed by approximately two orders of magnitude with essentially no drop in accuracy. Furthermore, we incorporate a color scheme for testing the level of confidence in the algorithm's inference (high = green, medium = amber, low = red). We demonstrate the speed and accuracy of our algorithm with application to both simulated and real data (Alpine cattle at 1 Hz resolution). On simulated data, our algorithm correctly identified the sites of interest for 99% of “high confidence” paths. For the cattle data, the algorithm identified the two known sites of interest: a watering hole and a milking station. It also identified several other sites which can be related to hypothesized environmental drivers (e.g., food). Our algorithm gives an efficient method for turning a long, high‐resolution movement path into a schematic representation of broadscale decisions, allowing a direct link to existing point‐to‐point analysis techniques such as optimal foraging theory. It is encoded into an R package called SitesInterest, so should serve as a valuable tool for making sense of these increasingly large data streams. John Wiley and Sons Inc. 2018-12-26 /pmc/articles/PMC6342090/ /pubmed/30680112 http://dx.doi.org/10.1002/ece3.4721 Text en © 2018 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Munden, Rhys Börger, Luca Wilson, Rory P. Redcliffe, James Loison, Anne Garel, Mathieu Potts, Jonathan R. Making sense of ultrahigh‐resolution movement data: A new algorithm for inferring sites of interest |
title | Making sense of ultrahigh‐resolution movement data: A new algorithm for inferring sites of interest |
title_full | Making sense of ultrahigh‐resolution movement data: A new algorithm for inferring sites of interest |
title_fullStr | Making sense of ultrahigh‐resolution movement data: A new algorithm for inferring sites of interest |
title_full_unstemmed | Making sense of ultrahigh‐resolution movement data: A new algorithm for inferring sites of interest |
title_short | Making sense of ultrahigh‐resolution movement data: A new algorithm for inferring sites of interest |
title_sort | making sense of ultrahigh‐resolution movement data: a new algorithm for inferring sites of interest |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6342090/ https://www.ncbi.nlm.nih.gov/pubmed/30680112 http://dx.doi.org/10.1002/ece3.4721 |
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