Cargando…
Machine learning coarse grained models for water
An accurate and computationally efficient molecular level description of mesoscopic behavior of ice-water systems remains a major challenge. Here, we introduce a set of machine-learned coarse-grained (CG) models (ML-BOP, ML-BOP(dih), and ML-mW) that accurately describe the structure and thermodynami...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6342926/ https://www.ncbi.nlm.nih.gov/pubmed/30670699 http://dx.doi.org/10.1038/s41467-018-08222-6 |
_version_ | 1783389181471358976 |
---|---|
author | Chan, Henry Cherukara, Mathew J. Narayanan, Badri Loeffler, Troy D. Benmore, Chris Gray, Stephen K. Sankaranarayanan, Subramanian K. R. S. |
author_facet | Chan, Henry Cherukara, Mathew J. Narayanan, Badri Loeffler, Troy D. Benmore, Chris Gray, Stephen K. Sankaranarayanan, Subramanian K. R. S. |
author_sort | Chan, Henry |
collection | PubMed |
description | An accurate and computationally efficient molecular level description of mesoscopic behavior of ice-water systems remains a major challenge. Here, we introduce a set of machine-learned coarse-grained (CG) models (ML-BOP, ML-BOP(dih), and ML-mW) that accurately describe the structure and thermodynamic anomalies of both water and ice at mesoscopic scales, all at two orders of magnitude cheaper computational cost than existing atomistic models. In a significant departure from conventional force-field fitting, we use a multilevel evolutionary strategy that trains CG models against not just energetics from first-principles and experiments but also temperature-dependent properties inferred from on-the-fly molecular dynamics (~ 10’s of milliseconds of overall trajectories). Our ML BOP models predict both the correct experimental melting point of ice and the temperature of maximum density of liquid water that remained elusive to-date. Our ML workflow navigates efficiently through the high-dimensional parameter space to even improve upon existing high-quality CG models (e.g. mW model). |
format | Online Article Text |
id | pubmed-6342926 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-63429262019-01-24 Machine learning coarse grained models for water Chan, Henry Cherukara, Mathew J. Narayanan, Badri Loeffler, Troy D. Benmore, Chris Gray, Stephen K. Sankaranarayanan, Subramanian K. R. S. Nat Commun Article An accurate and computationally efficient molecular level description of mesoscopic behavior of ice-water systems remains a major challenge. Here, we introduce a set of machine-learned coarse-grained (CG) models (ML-BOP, ML-BOP(dih), and ML-mW) that accurately describe the structure and thermodynamic anomalies of both water and ice at mesoscopic scales, all at two orders of magnitude cheaper computational cost than existing atomistic models. In a significant departure from conventional force-field fitting, we use a multilevel evolutionary strategy that trains CG models against not just energetics from first-principles and experiments but also temperature-dependent properties inferred from on-the-fly molecular dynamics (~ 10’s of milliseconds of overall trajectories). Our ML BOP models predict both the correct experimental melting point of ice and the temperature of maximum density of liquid water that remained elusive to-date. Our ML workflow navigates efficiently through the high-dimensional parameter space to even improve upon existing high-quality CG models (e.g. mW model). Nature Publishing Group UK 2019-01-22 /pmc/articles/PMC6342926/ /pubmed/30670699 http://dx.doi.org/10.1038/s41467-018-08222-6 Text en © This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Chan, Henry Cherukara, Mathew J. Narayanan, Badri Loeffler, Troy D. Benmore, Chris Gray, Stephen K. Sankaranarayanan, Subramanian K. R. S. Machine learning coarse grained models for water |
title | Machine learning coarse grained models for water |
title_full | Machine learning coarse grained models for water |
title_fullStr | Machine learning coarse grained models for water |
title_full_unstemmed | Machine learning coarse grained models for water |
title_short | Machine learning coarse grained models for water |
title_sort | machine learning coarse grained models for water |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6342926/ https://www.ncbi.nlm.nih.gov/pubmed/30670699 http://dx.doi.org/10.1038/s41467-018-08222-6 |
work_keys_str_mv | AT chanhenry machinelearningcoarsegrainedmodelsforwater AT cherukaramathewj machinelearningcoarsegrainedmodelsforwater AT narayananbadri machinelearningcoarsegrainedmodelsforwater AT loefflertroyd machinelearningcoarsegrainedmodelsforwater AT benmorechris machinelearningcoarsegrainedmodelsforwater AT graystephenk machinelearningcoarsegrainedmodelsforwater AT sankaranarayanansubramaniankrs machinelearningcoarsegrainedmodelsforwater |