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ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank

ccPDB 2.0 (http://webs.iiitd.edu.in/raghava/ccpdb) is an updated version of the manually curated database ccPDB that maintains datasets required for developing methods to predict the structure and function of proteins. The number of datasets compiled from literature increased from 45 to 141 in ccPDB...

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Autores principales: Agrawal, Piyush, Patiyal, Sumeet, Kumar, Rajesh, Kumar, Vinod, Singh, Harinder, Raghav, Pawan Kumar, Raghava, Gajendra P S
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6343045/
https://www.ncbi.nlm.nih.gov/pubmed/30689843
http://dx.doi.org/10.1093/database/bay142
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author Agrawal, Piyush
Patiyal, Sumeet
Kumar, Rajesh
Kumar, Vinod
Singh, Harinder
Raghav, Pawan Kumar
Raghava, Gajendra P S
author_facet Agrawal, Piyush
Patiyal, Sumeet
Kumar, Rajesh
Kumar, Vinod
Singh, Harinder
Raghav, Pawan Kumar
Raghava, Gajendra P S
author_sort Agrawal, Piyush
collection PubMed
description ccPDB 2.0 (http://webs.iiitd.edu.in/raghava/ccpdb) is an updated version of the manually curated database ccPDB that maintains datasets required for developing methods to predict the structure and function of proteins. The number of datasets compiled from literature increased from 45 to 141 in ccPDB 2.0. Similarly, the number of protein structures used for creating datasets also increased from ~74 000 to ~137 000 (PDB March 2018 release). ccPDB 2.0 provides the same web services and flexible tools which were present in the previous version of the database. In the updated version, links of the number of methods developed in the past few years have also been incorporated. This updated resource is built on responsive templates which is compatible with smartphones (mobile, iPhone, iPad, tablets etc.) and large screen gadgets. In summary, ccPDB 2.0 is a user-friendly web-based platform that provides comprehensive as well as updated information about datasets.
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spelling pubmed-63430452019-01-29 ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank Agrawal, Piyush Patiyal, Sumeet Kumar, Rajesh Kumar, Vinod Singh, Harinder Raghav, Pawan Kumar Raghava, Gajendra P S Database (Oxford) Database Update ccPDB 2.0 (http://webs.iiitd.edu.in/raghava/ccpdb) is an updated version of the manually curated database ccPDB that maintains datasets required for developing methods to predict the structure and function of proteins. The number of datasets compiled from literature increased from 45 to 141 in ccPDB 2.0. Similarly, the number of protein structures used for creating datasets also increased from ~74 000 to ~137 000 (PDB March 2018 release). ccPDB 2.0 provides the same web services and flexible tools which were present in the previous version of the database. In the updated version, links of the number of methods developed in the past few years have also been incorporated. This updated resource is built on responsive templates which is compatible with smartphones (mobile, iPhone, iPad, tablets etc.) and large screen gadgets. In summary, ccPDB 2.0 is a user-friendly web-based platform that provides comprehensive as well as updated information about datasets. Oxford University Press 2019-01-23 /pmc/articles/PMC6343045/ /pubmed/30689843 http://dx.doi.org/10.1093/database/bay142 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Update
Agrawal, Piyush
Patiyal, Sumeet
Kumar, Rajesh
Kumar, Vinod
Singh, Harinder
Raghav, Pawan Kumar
Raghava, Gajendra P S
ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank
title ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank
title_full ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank
title_fullStr ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank
title_full_unstemmed ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank
title_short ccPDB 2.0: an updated version of datasets created and compiled from Protein Data Bank
title_sort ccpdb 2.0: an updated version of datasets created and compiled from protein data bank
topic Database Update
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6343045/
https://www.ncbi.nlm.nih.gov/pubmed/30689843
http://dx.doi.org/10.1093/database/bay142
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