Cargando…

Frequency of heavy vehicle traffic and association with DNA methylation at age 18 years in a subset of the Isle of Wight birth cohort

Assessment of changes in DNA methylation (DNA-m) has the potential to identify adverse environmental exposures. To examine DNA-m among a subset of participants (n = 369) in the Isle of Wight birth cohort who reported variable near resident traffic frequencies. We used self-reported frequencies of he...

Descripción completa

Detalles Bibliográficos
Autores principales: Commodore, A, Mukherjee, N, Chung, D, Svendsen, E, Vena, J, Pearce, J, Roberts, J, Arshad, S H, Karmaus, W
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6343046/
https://www.ncbi.nlm.nih.gov/pubmed/30697444
http://dx.doi.org/10.1093/eep/dvy028
_version_ 1783389209315246080
author Commodore, A
Mukherjee, N
Chung, D
Svendsen, E
Vena, J
Pearce, J
Roberts, J
Arshad, S H
Karmaus, W
author_facet Commodore, A
Mukherjee, N
Chung, D
Svendsen, E
Vena, J
Pearce, J
Roberts, J
Arshad, S H
Karmaus, W
author_sort Commodore, A
collection PubMed
description Assessment of changes in DNA methylation (DNA-m) has the potential to identify adverse environmental exposures. To examine DNA-m among a subset of participants (n = 369) in the Isle of Wight birth cohort who reported variable near resident traffic frequencies. We used self-reported frequencies of heavy vehicles passing by the homes of study subjects as a proxy measure for TRAP, which were: never, seldom, 10 per day, 1–9 per hour and >10 per hour. Methylation of cytosine-phosphate-guanine (CpG) dinucleotide sequences in the DNA was assessed from blood samples collected at age 18 years (n = 369) in the F1 generation. We conducted an epigenome wide association study to examine CpGs related to the frequency of heavy vehicles passing by subjects’ homes, and employed multiple linear regression models to assess potential associations. We repeated some of these analysis in the F2 generation (n = 140). Thirty-five CpG sites were associated with heavy vehicular traffic. After adjusting for confounders, we found 23 CpGs that were more methylated, and 11 CpGs that were less methylated with increasing heavy vehicular traffic frequency among all subjects. In the F2 generation, 2 of 31 CpGs were associated with traffic frequencies and the direction of the effect was the same as in the F1 subset while differential methylation of 7 of 31 CpG sites correlated with gene expression. Our findings reveal differences in DNA-m in participants who reported higher heavy vehicular traffic frequencies when compared to participants who reported lower frequencies.
format Online
Article
Text
id pubmed-6343046
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-63430462019-01-29 Frequency of heavy vehicle traffic and association with DNA methylation at age 18 years in a subset of the Isle of Wight birth cohort Commodore, A Mukherjee, N Chung, D Svendsen, E Vena, J Pearce, J Roberts, J Arshad, S H Karmaus, W Environ Epigenet Research Article Assessment of changes in DNA methylation (DNA-m) has the potential to identify adverse environmental exposures. To examine DNA-m among a subset of participants (n = 369) in the Isle of Wight birth cohort who reported variable near resident traffic frequencies. We used self-reported frequencies of heavy vehicles passing by the homes of study subjects as a proxy measure for TRAP, which were: never, seldom, 10 per day, 1–9 per hour and >10 per hour. Methylation of cytosine-phosphate-guanine (CpG) dinucleotide sequences in the DNA was assessed from blood samples collected at age 18 years (n = 369) in the F1 generation. We conducted an epigenome wide association study to examine CpGs related to the frequency of heavy vehicles passing by subjects’ homes, and employed multiple linear regression models to assess potential associations. We repeated some of these analysis in the F2 generation (n = 140). Thirty-five CpG sites were associated with heavy vehicular traffic. After adjusting for confounders, we found 23 CpGs that were more methylated, and 11 CpGs that were less methylated with increasing heavy vehicular traffic frequency among all subjects. In the F2 generation, 2 of 31 CpGs were associated with traffic frequencies and the direction of the effect was the same as in the F1 subset while differential methylation of 7 of 31 CpG sites correlated with gene expression. Our findings reveal differences in DNA-m in participants who reported higher heavy vehicular traffic frequencies when compared to participants who reported lower frequencies. Oxford University Press 2019-01-23 /pmc/articles/PMC6343046/ /pubmed/30697444 http://dx.doi.org/10.1093/eep/dvy028 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Commodore, A
Mukherjee, N
Chung, D
Svendsen, E
Vena, J
Pearce, J
Roberts, J
Arshad, S H
Karmaus, W
Frequency of heavy vehicle traffic and association with DNA methylation at age 18 years in a subset of the Isle of Wight birth cohort
title Frequency of heavy vehicle traffic and association with DNA methylation at age 18 years in a subset of the Isle of Wight birth cohort
title_full Frequency of heavy vehicle traffic and association with DNA methylation at age 18 years in a subset of the Isle of Wight birth cohort
title_fullStr Frequency of heavy vehicle traffic and association with DNA methylation at age 18 years in a subset of the Isle of Wight birth cohort
title_full_unstemmed Frequency of heavy vehicle traffic and association with DNA methylation at age 18 years in a subset of the Isle of Wight birth cohort
title_short Frequency of heavy vehicle traffic and association with DNA methylation at age 18 years in a subset of the Isle of Wight birth cohort
title_sort frequency of heavy vehicle traffic and association with dna methylation at age 18 years in a subset of the isle of wight birth cohort
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6343046/
https://www.ncbi.nlm.nih.gov/pubmed/30697444
http://dx.doi.org/10.1093/eep/dvy028
work_keys_str_mv AT commodorea frequencyofheavyvehicletrafficandassociationwithdnamethylationatage18yearsinasubsetoftheisleofwightbirthcohort
AT mukherjeen frequencyofheavyvehicletrafficandassociationwithdnamethylationatage18yearsinasubsetoftheisleofwightbirthcohort
AT chungd frequencyofheavyvehicletrafficandassociationwithdnamethylationatage18yearsinasubsetoftheisleofwightbirthcohort
AT svendsene frequencyofheavyvehicletrafficandassociationwithdnamethylationatage18yearsinasubsetoftheisleofwightbirthcohort
AT venaj frequencyofheavyvehicletrafficandassociationwithdnamethylationatage18yearsinasubsetoftheisleofwightbirthcohort
AT pearcej frequencyofheavyvehicletrafficandassociationwithdnamethylationatage18yearsinasubsetoftheisleofwightbirthcohort
AT robertsj frequencyofheavyvehicletrafficandassociationwithdnamethylationatage18yearsinasubsetoftheisleofwightbirthcohort
AT arshadsh frequencyofheavyvehicletrafficandassociationwithdnamethylationatage18yearsinasubsetoftheisleofwightbirthcohort
AT karmausw frequencyofheavyvehicletrafficandassociationwithdnamethylationatage18yearsinasubsetoftheisleofwightbirthcohort