pdb-tools: a swiss army knife for molecular structures

The pdb-tools are a collection of Python scripts for working with molecular structure data in the Protein Data Bank (PDB) format. They allow users to edit, convert, and validate PDB files, from the command-line, in a simple but efficient manner. The pdb-tools are implemented in Python, without any e...

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Detalles Bibliográficos
Autores principales: Rodrigues, João P. G. L. M., Teixeira, João M.C., Trellet, Mikaël, Bonvin, Alexandre M. J. J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2018
Materias:
Software Tool Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6343223/
https://www.ncbi.nlm.nih.gov/pubmed/30705752
http://dx.doi.org/10.12688/f1000research.17456.1
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author Rodrigues, João P. G. L. M.
Teixeira, João M.C.
Trellet, Mikaël
Bonvin, Alexandre M. J. J.
author_facet Rodrigues, João P. G. L. M.
Teixeira, João M.C.
Trellet, Mikaël
Bonvin, Alexandre M. J. J.
author_sort Rodrigues, João P. G. L. M.
collection PubMed
description The pdb-tools are a collection of Python scripts for working with molecular structure data in the Protein Data Bank (PDB) format. They allow users to edit, convert, and validate PDB files, from the command-line, in a simple but efficient manner. The pdb-tools are implemented in Python, without any external dependencies, and are freely available under the open-source Apache License at https://github.com/haddocking/pdb-tools/ and on PyPI.
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spelling pubmed-63432232019-01-30 pdb-tools: a swiss army knife for molecular structures Rodrigues, João P. G. L. M. Teixeira, João M.C. Trellet, Mikaël Bonvin, Alexandre M. J. J. F1000Res Software Tool Article The pdb-tools are a collection of Python scripts for working with molecular structure data in the Protein Data Bank (PDB) format. They allow users to edit, convert, and validate PDB files, from the command-line, in a simple but efficient manner. The pdb-tools are implemented in Python, without any external dependencies, and are freely available under the open-source Apache License at https://github.com/haddocking/pdb-tools/ and on PyPI. F1000 Research Limited 2018-12-20 /pmc/articles/PMC6343223/ /pubmed/30705752 http://dx.doi.org/10.12688/f1000research.17456.1 Text en Copyright: © 2018 Rodrigues JPGLM et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Software Tool Article
Rodrigues, João P. G. L. M.
Teixeira, João M.C.
Trellet, Mikaël
Bonvin, Alexandre M. J. J.
pdb-tools: a swiss army knife for molecular structures
title pdb-tools: a swiss army knife for molecular structures
title_full pdb-tools: a swiss army knife for molecular structures
title_fullStr pdb-tools: a swiss army knife for molecular structures
title_full_unstemmed pdb-tools: a swiss army knife for molecular structures
title_short pdb-tools: a swiss army knife for molecular structures
title_sort pdb-tools: a swiss army knife for molecular structures
topic Software Tool Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6343223/
https://www.ncbi.nlm.nih.gov/pubmed/30705752
http://dx.doi.org/10.12688/f1000research.17456.1
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