Cargando…

Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis

BACKGROUND: Alternative polyadenylation (APA) has emerged as a pervasive mechanism that contributes to the transcriptome complexity and dynamics of gene regulation. The current tsunami of whole genome poly(A) site data from various conditions generated by 3′ end sequencing provides a valuable data s...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ye, Wenbin, Long, Yuqi, Ji, Guoli, Su, Yaru, Ye, Pengchao, Fu, Hongjuan, Wu, Xiaohui
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2019
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6343338/ https://www.ncbi.nlm.nih.gov/pubmed/30669970 http://dx.doi.org/10.1186/s12864-019-5433-7

Ejemplares similares

scNPF: an integrative framework assisted by network propagation and network fusion for preprocessing of single-cell RNA-seq data
por: Ye, Wenbin, et al.
Publicado: (2019)

scAPAdb: a comprehensive database of alternative polyadenylation at single-cell resolution
por: Zhu, Sheng, et al.
Publicado: (2021)

Genome-wide dynamics of alternative polyadenylation in rice
por: Fu, Haihui, et al.
Publicado: (2016)

Modeling of Genome-Wide Polyadenylation Signals in Xenopus tropicalis
por: Zhu, Sheng, et al.
Publicado: (2019)

scAPAmod: Profiling Alternative Polyadenylation Modalities in Single Cells from Single-Cell RNA-Seq Data
por: Qian, Lingwu, et al.
Publicado: (2022)

The role of alternative Polyadenylation in regulation of rhythmic gene expression
por: Ptitsyna, Natalia, et al.
Publicado: (2017)

Robust sparse canonical correlation analysis
por: Wilms, Ines, et al.
Publicado: (2016)

Genome level analysis of rice mRNA 3′-end processing signals and alternative polyadenylation
por: Shen, Yingjia, et al.
Publicado: (2008)

Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression
por: Lianoglou, Steve, et al.
Publicado: (2013)

Group sparse canonical correlation analysis for genomic data integration
por: Lin, Dongdong, et al.
Publicado: (2013)

PlantAPA: A Portal for Visualization and Analysis of Alternative Polyadenylation in Plants
por: Wu, Xiaohui, et al.
Publicado: (2016)

Sparse canonical correlation analysis for identifying, connecting and completing gene-expression networks
por: Waaijenborg, Sandra, et al.
Publicado: (2009)

A whitening approach to probabilistic canonical correlation analysis for omics data integration
por: Jendoubi, Takoua, et al.
Publicado: (2019)

Bioinformatics Analysis of Alternative Polyadenylation in Green Alga Chlamydomonas reinhardtii Using Transcriptome Sequences from Three Different Sequencing Platforms
por: Zhao, Zhixin, et al.
Publicado: (2014)

Sparse kernel canonical correlation analysis for discovery of nonlinear interactions in high-dimensional data
por: Yoshida, Kosuke, et al.
Publicado: (2017)

Comparative analysis of alternative polyadenylation in S. cerevisiae and S. pombe
por: Liu, Xiaochuan, et al.
Publicado: (2017)

Identification of multimodal brain imaging association via a parameter decomposition based sparse multi-view canonical correlation analysis method
por: Zhang, Jin, et al.
Publicado: (2022)

LABRAT reveals association of alternative polyadenylation with transcript localization, RNA binding protein expression, transcription speed, and cancer survival
por: Goering, Raeann, et al.
Publicado: (2021)

Alternative Polyadenylation: Methods, Findings, and Impacts
por: Chen, Wei, et al.
Publicado: (2017)

Exploration of an alternative reconstructed individual patient data-based approach for budget impact analysis of anticancer drugs
por: Ma, Yue, et al.
Publicado: (2023)

Discovery of alternative polyadenylation dynamics from single cell types
por: Ye, Congting, et al.
Publicado: (2020)

Alternative polyadenylation analysis in animals and plants: newly developed strategies for profiling, processing and validation
por: Zhang, Yunqi, et al.
Publicado: (2018)

A Putative TRAPα Protein of Microsporidia Nosema bombycis Exhibits Non-Canonical Alternative Polyadenylation in Transcripts
por: Wu, Yujiao, et al.
Publicado: (2023)

Alternative polyadenylation of cyclooxygenase-2
por: Hall-Pogar, Tyra, et al.
Publicado: (2005)

Alternative Polyadenylation in Human Diseases
por: Chang, Jae-Woong, et al.
Publicado: (2017)

A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq
por: Ye, Wenbin, et al.
Publicado: (2023)

Supervised Regularized Canonical Correlation Analysis: integrating histologic and proteomic measurements for predicting biochemical recurrence following prostate surgery
por: Golugula, Abhishek, et al.
Publicado: (2011)

APAatlas: decoding alternative polyadenylation across human tissues
por: Hong, Wei, et al.
Publicado: (2020)

Global analysis of regulatory divergence in the evolution of mouse alternative polyadenylation
por: Xiao, Mei‐Sheng, et al.
Publicado: (2016)

REPAC: analysis of alternative polyadenylation from RNA-sequencing data
por: Imada, Eddie L., et al.
Publicado: (2023)

Visualisation of the T cell differentiation programme by Canonical Correspondence Analysis of transcriptomes
por: Ono, Masahiro, et al.
Publicado: (2014)

Border analysis for spatial clusters
por: Oliveira, Fernando L. P., et al.
Publicado: (2018)

Proteogenomics analysis reveals specific genomic orientations of distal regulatory regions composed by non-canonical histone variants
por: Won, Kyoung-Jae, et al.
Publicado: (2015)

Clustering in surgical trials - database of intracluster correlations
por: Cook, Jonathan A, et al.
Publicado: (2012)

Animal-APAdb: a comprehensive animal alternative polyadenylation database
por: Jin, Weiwei, et al.
Publicado: (2020)

Dynamic alternative polyadenylation during iPSC differentiation into cardiomyocytes
por: Yang, Yanbo, et al.
Publicado: (2022)

Biased alternative polyadenylation in human tissues
por: Zhang, Haibo, et al.
Publicado: (2005)

Editorial: Alternative Polyadenylation in Development and Disease
por: Pai, Athma A., et al.
Publicado: (2022)

Regulation of alternative splicing and polyadenylation in neurons
por: Lee, Seungjae, et al.
Publicado: (2023)

Microarray Meta-Analysis of RNA-Binding Protein Functions in Alternative Polyadenylation
por: Hu, Wenchao, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_ub3cuvf3e17fq9andlvn74jgj8