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Label-Free Optical Detection of DNA Translocations through Plasmonic Nanopores

[Image: see text] Solid-state nanopores are single-molecule sensors that hold great potential for rapid protein and nucleic-acid analysis. Despite their many opportunities, the conventional ionic current detection scheme that is at the heart of the sensor suffers inherent limitations. This scheme in...

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Autores principales: Verschueren, Daniel V., Pud, Sergii, Shi, Xin, De Angelis, Lorenzo, Kuipers, L., Dekker, Cees
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2018
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6344913/
https://www.ncbi.nlm.nih.gov/pubmed/30512931
http://dx.doi.org/10.1021/acsnano.8b06758
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author Verschueren, Daniel V.
Pud, Sergii
Shi, Xin
De Angelis, Lorenzo
Kuipers, L.
Dekker, Cees
author_facet Verschueren, Daniel V.
Pud, Sergii
Shi, Xin
De Angelis, Lorenzo
Kuipers, L.
Dekker, Cees
author_sort Verschueren, Daniel V.
collection PubMed
description [Image: see text] Solid-state nanopores are single-molecule sensors that hold great potential for rapid protein and nucleic-acid analysis. Despite their many opportunities, the conventional ionic current detection scheme that is at the heart of the sensor suffers inherent limitations. This scheme intrinsically couples signal strength to the driving voltage, requires the use of high-concentration electrolytes, suffers from capacitive noise, and impairs high-density sensor integration. Here, we propose a fundamentally different detection scheme based on the enhanced light transmission through a plasmonic nanopore. We demonstrate that translocations of single DNA molecules can be optically detected, without the need of any labeling, in the transmitted light intensity through an inverted-bowtie plasmonic nanopore. Characterization and the cross-correlation of the optical signals with their electrical counterparts verify the plasmonic basis of the optical signal. We demonstrate DNA translocation event detection in a regime of driving voltages and buffer conditions where traditional ionic current sensing fails. This label-free optical detection scheme offers opportunities to probe native DNA–protein interactions at physiological conditions.
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spelling pubmed-63449132019-01-25 Label-Free Optical Detection of DNA Translocations through Plasmonic Nanopores Verschueren, Daniel V. Pud, Sergii Shi, Xin De Angelis, Lorenzo Kuipers, L. Dekker, Cees ACS Nano [Image: see text] Solid-state nanopores are single-molecule sensors that hold great potential for rapid protein and nucleic-acid analysis. Despite their many opportunities, the conventional ionic current detection scheme that is at the heart of the sensor suffers inherent limitations. This scheme intrinsically couples signal strength to the driving voltage, requires the use of high-concentration electrolytes, suffers from capacitive noise, and impairs high-density sensor integration. Here, we propose a fundamentally different detection scheme based on the enhanced light transmission through a plasmonic nanopore. We demonstrate that translocations of single DNA molecules can be optically detected, without the need of any labeling, in the transmitted light intensity through an inverted-bowtie plasmonic nanopore. Characterization and the cross-correlation of the optical signals with their electrical counterparts verify the plasmonic basis of the optical signal. We demonstrate DNA translocation event detection in a regime of driving voltages and buffer conditions where traditional ionic current sensing fails. This label-free optical detection scheme offers opportunities to probe native DNA–protein interactions at physiological conditions. American Chemical Society 2018-12-04 2019-01-22 /pmc/articles/PMC6344913/ /pubmed/30512931 http://dx.doi.org/10.1021/acsnano.8b06758 Text en Copyright © 2018 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes.
spellingShingle Verschueren, Daniel V.
Pud, Sergii
Shi, Xin
De Angelis, Lorenzo
Kuipers, L.
Dekker, Cees
Label-Free Optical Detection of DNA Translocations through Plasmonic Nanopores
title Label-Free Optical Detection of DNA Translocations through Plasmonic Nanopores
title_full Label-Free Optical Detection of DNA Translocations through Plasmonic Nanopores
title_fullStr Label-Free Optical Detection of DNA Translocations through Plasmonic Nanopores
title_full_unstemmed Label-Free Optical Detection of DNA Translocations through Plasmonic Nanopores
title_short Label-Free Optical Detection of DNA Translocations through Plasmonic Nanopores
title_sort label-free optical detection of dna translocations through plasmonic nanopores
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6344913/
https://www.ncbi.nlm.nih.gov/pubmed/30512931
http://dx.doi.org/10.1021/acsnano.8b06758
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