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Finding and analysing the minimum set of driver nodes required to control multilayer networks

It is difficult to control multilayer networks in situations with real-world complexity. Here, we first define the multilayer control problem in terms of the minimum dominating set (MDS) controllability framework and mathematically demonstrate that simple formulas can be used to estimate the size of...

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Autores principales: Nacher, Jose C., Ishitsuka, Masayuki, Miyazaki, Shuichi, Akutsu, Tatsuya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6345816/
https://www.ncbi.nlm.nih.gov/pubmed/30679639
http://dx.doi.org/10.1038/s41598-018-37046-z
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author Nacher, Jose C.
Ishitsuka, Masayuki
Miyazaki, Shuichi
Akutsu, Tatsuya
author_facet Nacher, Jose C.
Ishitsuka, Masayuki
Miyazaki, Shuichi
Akutsu, Tatsuya
author_sort Nacher, Jose C.
collection PubMed
description It is difficult to control multilayer networks in situations with real-world complexity. Here, we first define the multilayer control problem in terms of the minimum dominating set (MDS) controllability framework and mathematically demonstrate that simple formulas can be used to estimate the size of the minimum dominating set in multilayer (MDSM) complex networks. Second, we develop a new algorithm that efficiently identifies the MDSM in up to 6 layers, with several thousand nodes in each layer network. Interestingly, the findings reveal that the MDSM size for similar networks does not significantly differ from that required to control a single network. This result opens future directions for controlling, for example, multiple species by identifying a common set of enzymes or proteins for drug targeting. We apply our methods to 70 genome-wide metabolic networks across major plant lineages, unveiling some relationships between controllability in multilayer networks and metabolic functions at the genome scale.
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spelling pubmed-63458162019-01-29 Finding and analysing the minimum set of driver nodes required to control multilayer networks Nacher, Jose C. Ishitsuka, Masayuki Miyazaki, Shuichi Akutsu, Tatsuya Sci Rep Article It is difficult to control multilayer networks in situations with real-world complexity. Here, we first define the multilayer control problem in terms of the minimum dominating set (MDS) controllability framework and mathematically demonstrate that simple formulas can be used to estimate the size of the minimum dominating set in multilayer (MDSM) complex networks. Second, we develop a new algorithm that efficiently identifies the MDSM in up to 6 layers, with several thousand nodes in each layer network. Interestingly, the findings reveal that the MDSM size for similar networks does not significantly differ from that required to control a single network. This result opens future directions for controlling, for example, multiple species by identifying a common set of enzymes or proteins for drug targeting. We apply our methods to 70 genome-wide metabolic networks across major plant lineages, unveiling some relationships between controllability in multilayer networks and metabolic functions at the genome scale. Nature Publishing Group UK 2019-01-24 /pmc/articles/PMC6345816/ /pubmed/30679639 http://dx.doi.org/10.1038/s41598-018-37046-z Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Nacher, Jose C.
Ishitsuka, Masayuki
Miyazaki, Shuichi
Akutsu, Tatsuya
Finding and analysing the minimum set of driver nodes required to control multilayer networks
title Finding and analysing the minimum set of driver nodes required to control multilayer networks
title_full Finding and analysing the minimum set of driver nodes required to control multilayer networks
title_fullStr Finding and analysing the minimum set of driver nodes required to control multilayer networks
title_full_unstemmed Finding and analysing the minimum set of driver nodes required to control multilayer networks
title_short Finding and analysing the minimum set of driver nodes required to control multilayer networks
title_sort finding and analysing the minimum set of driver nodes required to control multilayer networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6345816/
https://www.ncbi.nlm.nih.gov/pubmed/30679639
http://dx.doi.org/10.1038/s41598-018-37046-z
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