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Assessing robustness of radiomic features by image perturbation
Image features need to be robust against differences in positioning, acquisition and segmentation to ensure reproducibility. Radiomic models that only include robust features can be used to analyse new images, whereas models with non-robust features may fail to predict the outcome of interest accura...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6345842/ https://www.ncbi.nlm.nih.gov/pubmed/30679599 http://dx.doi.org/10.1038/s41598-018-36938-4 |
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author | Zwanenburg, Alex Leger, Stefan Agolli, Linda Pilz, Karoline Troost, Esther G. C. Richter, Christian Löck, Steffen |
author_facet | Zwanenburg, Alex Leger, Stefan Agolli, Linda Pilz, Karoline Troost, Esther G. C. Richter, Christian Löck, Steffen |
author_sort | Zwanenburg, Alex |
collection | PubMed |
description | Image features need to be robust against differences in positioning, acquisition and segmentation to ensure reproducibility. Radiomic models that only include robust features can be used to analyse new images, whereas models with non-robust features may fail to predict the outcome of interest accurately. Test-retest imaging is recommended to assess robustness, but may not be available for the phenotype of interest. We therefore investigated 18 combinations of image perturbations to determine feature robustness, based on noise addition (N), translation (T), rotation (R), volume growth/shrinkage (V) and supervoxel-based contour randomisation (C). Test-retest and perturbation robustness were compared for combined total of 4032 morphological, statistical and texture features that were computed from the gross tumour volume in two cohorts with computed tomography imaging: I) 31 non-small-cell lung cancer (NSCLC) patients; II): 19 head-and-neck squamous cell carcinoma (HNSCC) patients. Robustness was determined using the 95% confidence interval (CI) of the intraclass correlation coefficient (1, 1). Features with CI ≥ 0:90 were considered robust. The NTCV, TCV, RNCV and RCV perturbation chain produced similar results and identified the fewest false positive robust features (NSCLC: 0.2–0.9%; HNSCC: 1.7–1.9%). Thus, these perturbation chains may be used as an alternative to test-retest imaging to assess feature robustness. |
format | Online Article Text |
id | pubmed-6345842 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-63458422019-01-29 Assessing robustness of radiomic features by image perturbation Zwanenburg, Alex Leger, Stefan Agolli, Linda Pilz, Karoline Troost, Esther G. C. Richter, Christian Löck, Steffen Sci Rep Article Image features need to be robust against differences in positioning, acquisition and segmentation to ensure reproducibility. Radiomic models that only include robust features can be used to analyse new images, whereas models with non-robust features may fail to predict the outcome of interest accurately. Test-retest imaging is recommended to assess robustness, but may not be available for the phenotype of interest. We therefore investigated 18 combinations of image perturbations to determine feature robustness, based on noise addition (N), translation (T), rotation (R), volume growth/shrinkage (V) and supervoxel-based contour randomisation (C). Test-retest and perturbation robustness were compared for combined total of 4032 morphological, statistical and texture features that were computed from the gross tumour volume in two cohorts with computed tomography imaging: I) 31 non-small-cell lung cancer (NSCLC) patients; II): 19 head-and-neck squamous cell carcinoma (HNSCC) patients. Robustness was determined using the 95% confidence interval (CI) of the intraclass correlation coefficient (1, 1). Features with CI ≥ 0:90 were considered robust. The NTCV, TCV, RNCV and RCV perturbation chain produced similar results and identified the fewest false positive robust features (NSCLC: 0.2–0.9%; HNSCC: 1.7–1.9%). Thus, these perturbation chains may be used as an alternative to test-retest imaging to assess feature robustness. Nature Publishing Group UK 2019-01-24 /pmc/articles/PMC6345842/ /pubmed/30679599 http://dx.doi.org/10.1038/s41598-018-36938-4 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Zwanenburg, Alex Leger, Stefan Agolli, Linda Pilz, Karoline Troost, Esther G. C. Richter, Christian Löck, Steffen Assessing robustness of radiomic features by image perturbation |
title | Assessing robustness of radiomic features by image perturbation |
title_full | Assessing robustness of radiomic features by image perturbation |
title_fullStr | Assessing robustness of radiomic features by image perturbation |
title_full_unstemmed | Assessing robustness of radiomic features by image perturbation |
title_short | Assessing robustness of radiomic features by image perturbation |
title_sort | assessing robustness of radiomic features by image perturbation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6345842/ https://www.ncbi.nlm.nih.gov/pubmed/30679599 http://dx.doi.org/10.1038/s41598-018-36938-4 |
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