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Can enzyme proximity accelerate cascade reactions?

The last decade has seen an exponential expansion of interest in conjugating multiple enzymes of cascades in close proximity to each other, with the overarching goal being to accelerate the overall reaction rate. However, some evidence has emerged that there is no effect of proximity channeling on t...

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Autores principales: Kuzmak, Andrij, Carmali, Sheiliza, von Lieres, Eric, Russell, Alan J., Kondrat, Svyatoslav
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6345930/
https://www.ncbi.nlm.nih.gov/pubmed/30679600
http://dx.doi.org/10.1038/s41598-018-37034-3
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author Kuzmak, Andrij
Carmali, Sheiliza
von Lieres, Eric
Russell, Alan J.
Kondrat, Svyatoslav
author_facet Kuzmak, Andrij
Carmali, Sheiliza
von Lieres, Eric
Russell, Alan J.
Kondrat, Svyatoslav
author_sort Kuzmak, Andrij
collection PubMed
description The last decade has seen an exponential expansion of interest in conjugating multiple enzymes of cascades in close proximity to each other, with the overarching goal being to accelerate the overall reaction rate. However, some evidence has emerged that there is no effect of proximity channeling on the reaction velocity of the popular GOx-HRP cascade, particularly in the presence of a competing enzyme (catalase). Herein, we rationalize these experimental results quantitatively. We show that, in general, proximity channeling can enhance reaction velocity in the presence of competing enzymes, but in steady state a significant enhancement can only be achieved for diffusion-limited reactions or at high concentrations of competing enzymes. We provide simple equations to estimate the effect of channeling quantitatively and demonstrate that proximity can have a more pronounced effect under crowding conditions in vivo, particularly that crowding can enhance the overall rates of channeled cascade reactions.
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spelling pubmed-63459302019-01-29 Can enzyme proximity accelerate cascade reactions? Kuzmak, Andrij Carmali, Sheiliza von Lieres, Eric Russell, Alan J. Kondrat, Svyatoslav Sci Rep Article The last decade has seen an exponential expansion of interest in conjugating multiple enzymes of cascades in close proximity to each other, with the overarching goal being to accelerate the overall reaction rate. However, some evidence has emerged that there is no effect of proximity channeling on the reaction velocity of the popular GOx-HRP cascade, particularly in the presence of a competing enzyme (catalase). Herein, we rationalize these experimental results quantitatively. We show that, in general, proximity channeling can enhance reaction velocity in the presence of competing enzymes, but in steady state a significant enhancement can only be achieved for diffusion-limited reactions or at high concentrations of competing enzymes. We provide simple equations to estimate the effect of channeling quantitatively and demonstrate that proximity can have a more pronounced effect under crowding conditions in vivo, particularly that crowding can enhance the overall rates of channeled cascade reactions. Nature Publishing Group UK 2019-01-24 /pmc/articles/PMC6345930/ /pubmed/30679600 http://dx.doi.org/10.1038/s41598-018-37034-3 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kuzmak, Andrij
Carmali, Sheiliza
von Lieres, Eric
Russell, Alan J.
Kondrat, Svyatoslav
Can enzyme proximity accelerate cascade reactions?
title Can enzyme proximity accelerate cascade reactions?
title_full Can enzyme proximity accelerate cascade reactions?
title_fullStr Can enzyme proximity accelerate cascade reactions?
title_full_unstemmed Can enzyme proximity accelerate cascade reactions?
title_short Can enzyme proximity accelerate cascade reactions?
title_sort can enzyme proximity accelerate cascade reactions?
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6345930/
https://www.ncbi.nlm.nih.gov/pubmed/30679600
http://dx.doi.org/10.1038/s41598-018-37034-3
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