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Can enzyme proximity accelerate cascade reactions?
The last decade has seen an exponential expansion of interest in conjugating multiple enzymes of cascades in close proximity to each other, with the overarching goal being to accelerate the overall reaction rate. However, some evidence has emerged that there is no effect of proximity channeling on t...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6345930/ https://www.ncbi.nlm.nih.gov/pubmed/30679600 http://dx.doi.org/10.1038/s41598-018-37034-3 |
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author | Kuzmak, Andrij Carmali, Sheiliza von Lieres, Eric Russell, Alan J. Kondrat, Svyatoslav |
author_facet | Kuzmak, Andrij Carmali, Sheiliza von Lieres, Eric Russell, Alan J. Kondrat, Svyatoslav |
author_sort | Kuzmak, Andrij |
collection | PubMed |
description | The last decade has seen an exponential expansion of interest in conjugating multiple enzymes of cascades in close proximity to each other, with the overarching goal being to accelerate the overall reaction rate. However, some evidence has emerged that there is no effect of proximity channeling on the reaction velocity of the popular GOx-HRP cascade, particularly in the presence of a competing enzyme (catalase). Herein, we rationalize these experimental results quantitatively. We show that, in general, proximity channeling can enhance reaction velocity in the presence of competing enzymes, but in steady state a significant enhancement can only be achieved for diffusion-limited reactions or at high concentrations of competing enzymes. We provide simple equations to estimate the effect of channeling quantitatively and demonstrate that proximity can have a more pronounced effect under crowding conditions in vivo, particularly that crowding can enhance the overall rates of channeled cascade reactions. |
format | Online Article Text |
id | pubmed-6345930 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-63459302019-01-29 Can enzyme proximity accelerate cascade reactions? Kuzmak, Andrij Carmali, Sheiliza von Lieres, Eric Russell, Alan J. Kondrat, Svyatoslav Sci Rep Article The last decade has seen an exponential expansion of interest in conjugating multiple enzymes of cascades in close proximity to each other, with the overarching goal being to accelerate the overall reaction rate. However, some evidence has emerged that there is no effect of proximity channeling on the reaction velocity of the popular GOx-HRP cascade, particularly in the presence of a competing enzyme (catalase). Herein, we rationalize these experimental results quantitatively. We show that, in general, proximity channeling can enhance reaction velocity in the presence of competing enzymes, but in steady state a significant enhancement can only be achieved for diffusion-limited reactions or at high concentrations of competing enzymes. We provide simple equations to estimate the effect of channeling quantitatively and demonstrate that proximity can have a more pronounced effect under crowding conditions in vivo, particularly that crowding can enhance the overall rates of channeled cascade reactions. Nature Publishing Group UK 2019-01-24 /pmc/articles/PMC6345930/ /pubmed/30679600 http://dx.doi.org/10.1038/s41598-018-37034-3 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Kuzmak, Andrij Carmali, Sheiliza von Lieres, Eric Russell, Alan J. Kondrat, Svyatoslav Can enzyme proximity accelerate cascade reactions? |
title | Can enzyme proximity accelerate cascade reactions? |
title_full | Can enzyme proximity accelerate cascade reactions? |
title_fullStr | Can enzyme proximity accelerate cascade reactions? |
title_full_unstemmed | Can enzyme proximity accelerate cascade reactions? |
title_short | Can enzyme proximity accelerate cascade reactions? |
title_sort | can enzyme proximity accelerate cascade reactions? |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6345930/ https://www.ncbi.nlm.nih.gov/pubmed/30679600 http://dx.doi.org/10.1038/s41598-018-37034-3 |
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