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Different mitogenomic codon usage patterns between damselflies and dragonflies and nine complete mitogenomes for odonates

Damselflies and dragonflies, of the order Odonata, have distinct body plans and predatory abilities. Knowledge of their various evolutionary histories will allow for an understanding of the genetic and phenotypic evolution of insects. Mitogenomes are suitable materials to elucidate this, but the mit...

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Autores principales: Guan, De-Long, Qian, Zeng-Qiang, Ma, Li-Bin, Bai, Yi, Xu, Sheng-Quan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6345984/
https://www.ncbi.nlm.nih.gov/pubmed/30679466
http://dx.doi.org/10.1038/s41598-018-35760-2
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author Guan, De-Long
Qian, Zeng-Qiang
Ma, Li-Bin
Bai, Yi
Xu, Sheng-Quan
author_facet Guan, De-Long
Qian, Zeng-Qiang
Ma, Li-Bin
Bai, Yi
Xu, Sheng-Quan
author_sort Guan, De-Long
collection PubMed
description Damselflies and dragonflies, of the order Odonata, have distinct body plans and predatory abilities. Knowledge of their various evolutionary histories will allow for an understanding of the genetic and phenotypic evolution of insects. Mitogenomes are suitable materials to elucidate this, but the mitogenome of only a few odonates have been annotated. Herein, we report the complete mitogenome of nine odonates, including seven dragonflies and two damselflies, and a comprehensive analysis of the codon usage in 31 Odonata mitogenomes with the aim to estimate their evolutionary characteristics. Overall, a weak codon bias exists among odonate mitogenomes, although this favours AT-ending codons. Damselflies have a weaker codon usage bias than dragonflies, and 37 codons have significantly different usages. Both directional mutation and purifying selection shape damselfly and dragonfly mitogenomes. Although inevitable, directional mutation bias plays a minor role, whereas purifying selection pressure is the dominant evolutionary force. A higher selection pressure is observed in dragonflies than in damselflies, but it mainly acts on codon usage patterns rather than amino acid translation. Our findings suggest that dragonflies might have more efficient mitochondrial gene expression levels than damselflies, producing more proteins that support their locomotion and predatory abilities.
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spelling pubmed-63459842019-01-29 Different mitogenomic codon usage patterns between damselflies and dragonflies and nine complete mitogenomes for odonates Guan, De-Long Qian, Zeng-Qiang Ma, Li-Bin Bai, Yi Xu, Sheng-Quan Sci Rep Article Damselflies and dragonflies, of the order Odonata, have distinct body plans and predatory abilities. Knowledge of their various evolutionary histories will allow for an understanding of the genetic and phenotypic evolution of insects. Mitogenomes are suitable materials to elucidate this, but the mitogenome of only a few odonates have been annotated. Herein, we report the complete mitogenome of nine odonates, including seven dragonflies and two damselflies, and a comprehensive analysis of the codon usage in 31 Odonata mitogenomes with the aim to estimate their evolutionary characteristics. Overall, a weak codon bias exists among odonate mitogenomes, although this favours AT-ending codons. Damselflies have a weaker codon usage bias than dragonflies, and 37 codons have significantly different usages. Both directional mutation and purifying selection shape damselfly and dragonfly mitogenomes. Although inevitable, directional mutation bias plays a minor role, whereas purifying selection pressure is the dominant evolutionary force. A higher selection pressure is observed in dragonflies than in damselflies, but it mainly acts on codon usage patterns rather than amino acid translation. Our findings suggest that dragonflies might have more efficient mitochondrial gene expression levels than damselflies, producing more proteins that support their locomotion and predatory abilities. Nature Publishing Group UK 2019-01-24 /pmc/articles/PMC6345984/ /pubmed/30679466 http://dx.doi.org/10.1038/s41598-018-35760-2 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Guan, De-Long
Qian, Zeng-Qiang
Ma, Li-Bin
Bai, Yi
Xu, Sheng-Quan
Different mitogenomic codon usage patterns between damselflies and dragonflies and nine complete mitogenomes for odonates
title Different mitogenomic codon usage patterns between damselflies and dragonflies and nine complete mitogenomes for odonates
title_full Different mitogenomic codon usage patterns between damselflies and dragonflies and nine complete mitogenomes for odonates
title_fullStr Different mitogenomic codon usage patterns between damselflies and dragonflies and nine complete mitogenomes for odonates
title_full_unstemmed Different mitogenomic codon usage patterns between damselflies and dragonflies and nine complete mitogenomes for odonates
title_short Different mitogenomic codon usage patterns between damselflies and dragonflies and nine complete mitogenomes for odonates
title_sort different mitogenomic codon usage patterns between damselflies and dragonflies and nine complete mitogenomes for odonates
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6345984/
https://www.ncbi.nlm.nih.gov/pubmed/30679466
http://dx.doi.org/10.1038/s41598-018-35760-2
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