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An improved methodology for quantifying causality in complex ecological systems
This paper provides a statistical methodology for quantifying causality in complex dynamical systems, based on analysis of multidimensional time series data of the state variables. The methodology integrates Granger’s causality analysis based on the log-likelihood function expansion (Partial pair-wi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6347266/ https://www.ncbi.nlm.nih.gov/pubmed/30682020 http://dx.doi.org/10.1371/journal.pone.0208078 |
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author | Solvang, Hiroko Kato Subbey, Sam |
author_facet | Solvang, Hiroko Kato Subbey, Sam |
author_sort | Solvang, Hiroko Kato |
collection | PubMed |
description | This paper provides a statistical methodology for quantifying causality in complex dynamical systems, based on analysis of multidimensional time series data of the state variables. The methodology integrates Granger’s causality analysis based on the log-likelihood function expansion (Partial pair-wise causality), and Akaike’s power contribution approach over the whole frequency domain (Total causality). The proposed methodology addresses a major drawback of existing methodologies namely, their inability to use time series observation of state variables to quantify causality in complex systems. We first perform a simulation study to verify the efficacy of the methodology using data generated by several multivariate autoregressive processes, and its sensitivity to data sample size. We demonstrate application of the methodology to real data by deriving inter-species relationships that define key food web drivers of the Barents Sea ecosystem. Our results show that the proposed methodology is a useful tool in early stage causality analysis of complex feedback systems. |
format | Online Article Text |
id | pubmed-6347266 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-63472662019-02-02 An improved methodology for quantifying causality in complex ecological systems Solvang, Hiroko Kato Subbey, Sam PLoS One Research Article This paper provides a statistical methodology for quantifying causality in complex dynamical systems, based on analysis of multidimensional time series data of the state variables. The methodology integrates Granger’s causality analysis based on the log-likelihood function expansion (Partial pair-wise causality), and Akaike’s power contribution approach over the whole frequency domain (Total causality). The proposed methodology addresses a major drawback of existing methodologies namely, their inability to use time series observation of state variables to quantify causality in complex systems. We first perform a simulation study to verify the efficacy of the methodology using data generated by several multivariate autoregressive processes, and its sensitivity to data sample size. We demonstrate application of the methodology to real data by deriving inter-species relationships that define key food web drivers of the Barents Sea ecosystem. Our results show that the proposed methodology is a useful tool in early stage causality analysis of complex feedback systems. Public Library of Science 2019-01-25 /pmc/articles/PMC6347266/ /pubmed/30682020 http://dx.doi.org/10.1371/journal.pone.0208078 Text en © 2019 Solvang, Subbey http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Solvang, Hiroko Kato Subbey, Sam An improved methodology for quantifying causality in complex ecological systems |
title | An improved methodology for quantifying causality in complex ecological systems |
title_full | An improved methodology for quantifying causality in complex ecological systems |
title_fullStr | An improved methodology for quantifying causality in complex ecological systems |
title_full_unstemmed | An improved methodology for quantifying causality in complex ecological systems |
title_short | An improved methodology for quantifying causality in complex ecological systems |
title_sort | improved methodology for quantifying causality in complex ecological systems |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6347266/ https://www.ncbi.nlm.nih.gov/pubmed/30682020 http://dx.doi.org/10.1371/journal.pone.0208078 |
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