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An improved methodology for quantifying causality in complex ecological systems

This paper provides a statistical methodology for quantifying causality in complex dynamical systems, based on analysis of multidimensional time series data of the state variables. The methodology integrates Granger’s causality analysis based on the log-likelihood function expansion (Partial pair-wi...

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Detalles Bibliográficos
Autores principales: Solvang, Hiroko Kato, Subbey, Sam
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6347266/
https://www.ncbi.nlm.nih.gov/pubmed/30682020
http://dx.doi.org/10.1371/journal.pone.0208078
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author Solvang, Hiroko Kato
Subbey, Sam
author_facet Solvang, Hiroko Kato
Subbey, Sam
author_sort Solvang, Hiroko Kato
collection PubMed
description This paper provides a statistical methodology for quantifying causality in complex dynamical systems, based on analysis of multidimensional time series data of the state variables. The methodology integrates Granger’s causality analysis based on the log-likelihood function expansion (Partial pair-wise causality), and Akaike’s power contribution approach over the whole frequency domain (Total causality). The proposed methodology addresses a major drawback of existing methodologies namely, their inability to use time series observation of state variables to quantify causality in complex systems. We first perform a simulation study to verify the efficacy of the methodology using data generated by several multivariate autoregressive processes, and its sensitivity to data sample size. We demonstrate application of the methodology to real data by deriving inter-species relationships that define key food web drivers of the Barents Sea ecosystem. Our results show that the proposed methodology is a useful tool in early stage causality analysis of complex feedback systems.
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spelling pubmed-63472662019-02-02 An improved methodology for quantifying causality in complex ecological systems Solvang, Hiroko Kato Subbey, Sam PLoS One Research Article This paper provides a statistical methodology for quantifying causality in complex dynamical systems, based on analysis of multidimensional time series data of the state variables. The methodology integrates Granger’s causality analysis based on the log-likelihood function expansion (Partial pair-wise causality), and Akaike’s power contribution approach over the whole frequency domain (Total causality). The proposed methodology addresses a major drawback of existing methodologies namely, their inability to use time series observation of state variables to quantify causality in complex systems. We first perform a simulation study to verify the efficacy of the methodology using data generated by several multivariate autoregressive processes, and its sensitivity to data sample size. We demonstrate application of the methodology to real data by deriving inter-species relationships that define key food web drivers of the Barents Sea ecosystem. Our results show that the proposed methodology is a useful tool in early stage causality analysis of complex feedback systems. Public Library of Science 2019-01-25 /pmc/articles/PMC6347266/ /pubmed/30682020 http://dx.doi.org/10.1371/journal.pone.0208078 Text en © 2019 Solvang, Subbey http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Solvang, Hiroko Kato
Subbey, Sam
An improved methodology for quantifying causality in complex ecological systems
title An improved methodology for quantifying causality in complex ecological systems
title_full An improved methodology for quantifying causality in complex ecological systems
title_fullStr An improved methodology for quantifying causality in complex ecological systems
title_full_unstemmed An improved methodology for quantifying causality in complex ecological systems
title_short An improved methodology for quantifying causality in complex ecological systems
title_sort improved methodology for quantifying causality in complex ecological systems
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6347266/
https://www.ncbi.nlm.nih.gov/pubmed/30682020
http://dx.doi.org/10.1371/journal.pone.0208078
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