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Trajectory optimized NUFFT: Faster non‐Cartesian MRI reconstruction through prior knowledge and parallel architectures

PURPOSE: The non‐uniform fast Fourier transform (NUFFT) involves interpolation of non‐uniformly sampled Fourier data onto a Cartesian grid, an interpolation that is slowed by complex, non‐local data access patterns. A faster NUFFT would increase the clinical relevance of the plethora of advanced non...

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Autores principales: Smith, David S., Sengupta, Saikat, Smith, Seth A., Brian Welch, E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6347498/
https://www.ncbi.nlm.nih.gov/pubmed/30329181
http://dx.doi.org/10.1002/mrm.27497
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author Smith, David S.
Sengupta, Saikat
Smith, Seth A.
Brian Welch, E.
author_facet Smith, David S.
Sengupta, Saikat
Smith, Seth A.
Brian Welch, E.
author_sort Smith, David S.
collection PubMed
description PURPOSE: The non‐uniform fast Fourier transform (NUFFT) involves interpolation of non‐uniformly sampled Fourier data onto a Cartesian grid, an interpolation that is slowed by complex, non‐local data access patterns. A faster NUFFT would increase the clinical relevance of the plethora of advanced non‐Cartesian acquisition methods. METHODS: Here we customize the NUFFT procedure for a radial trajectory and GPU architecture to eliminate the bottlenecks encountered when allowing for arbitrary trajectories and hardware. We call the result TRON, for TRajectory Optimized NUFFT. We benchmark the speed and accuracy TRON on a Shepp‐Logan phantom and on whole‐body continuous golden‐angle radial MRI. RESULTS: TRON was 6–30× faster than the closest competitor, depending on test data set, and was the most accurate code tested. CONCLUSIONS: Specialization of the NUFFT algorithm for a particular trajectory yielded significant speed gains. TRON can be easily extended to other trajectories, such as spiral and PROPELLER. TRON can be downloaded at http://github.com/davidssmith/TRON.
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spelling pubmed-63474982019-03-01 Trajectory optimized NUFFT: Faster non‐Cartesian MRI reconstruction through prior knowledge and parallel architectures Smith, David S. Sengupta, Saikat Smith, Seth A. Brian Welch, E. Magn Reson Med Full Papers—Computer Processing and Modeling PURPOSE: The non‐uniform fast Fourier transform (NUFFT) involves interpolation of non‐uniformly sampled Fourier data onto a Cartesian grid, an interpolation that is slowed by complex, non‐local data access patterns. A faster NUFFT would increase the clinical relevance of the plethora of advanced non‐Cartesian acquisition methods. METHODS: Here we customize the NUFFT procedure for a radial trajectory and GPU architecture to eliminate the bottlenecks encountered when allowing for arbitrary trajectories and hardware. We call the result TRON, for TRajectory Optimized NUFFT. We benchmark the speed and accuracy TRON on a Shepp‐Logan phantom and on whole‐body continuous golden‐angle radial MRI. RESULTS: TRON was 6–30× faster than the closest competitor, depending on test data set, and was the most accurate code tested. CONCLUSIONS: Specialization of the NUFFT algorithm for a particular trajectory yielded significant speed gains. TRON can be easily extended to other trajectories, such as spiral and PROPELLER. TRON can be downloaded at http://github.com/davidssmith/TRON. John Wiley and Sons Inc. 2018-10-17 2019-03 /pmc/articles/PMC6347498/ /pubmed/30329181 http://dx.doi.org/10.1002/mrm.27497 Text en © 2018 The Authors Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Full Papers—Computer Processing and Modeling
Smith, David S.
Sengupta, Saikat
Smith, Seth A.
Brian Welch, E.
Trajectory optimized NUFFT: Faster non‐Cartesian MRI reconstruction through prior knowledge and parallel architectures
title Trajectory optimized NUFFT: Faster non‐Cartesian MRI reconstruction through prior knowledge and parallel architectures
title_full Trajectory optimized NUFFT: Faster non‐Cartesian MRI reconstruction through prior knowledge and parallel architectures
title_fullStr Trajectory optimized NUFFT: Faster non‐Cartesian MRI reconstruction through prior knowledge and parallel architectures
title_full_unstemmed Trajectory optimized NUFFT: Faster non‐Cartesian MRI reconstruction through prior knowledge and parallel architectures
title_short Trajectory optimized NUFFT: Faster non‐Cartesian MRI reconstruction through prior knowledge and parallel architectures
title_sort trajectory optimized nufft: faster non‐cartesian mri reconstruction through prior knowledge and parallel architectures
topic Full Papers—Computer Processing and Modeling
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6347498/
https://www.ncbi.nlm.nih.gov/pubmed/30329181
http://dx.doi.org/10.1002/mrm.27497
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