Cargando…

Chromosome conformation capture resolved near complete genome assembly of broomcorn millet

Broomcorn millet (Panicum miliaceum L.) has strong tolerance to abiotic stresses, and is probably one of the oldest crops, with its earliest cultivation that dated back to ca. ~10,000 years. We report here its genome assembly through a combination of PacBio sequencing, BioNano, and Hi-C (in vivo) ma...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shi, Junpeng, Ma, Xuxu, Zhang, Jihong, Zhou, Yingsi, Liu, Minxuan, Huang, Liangliang, Sun, Silong, Zhang, Xiangbo, Gao, Xiang, Zhan, Wei, Li, Pinghua, Wang, Lun, Lu, Ping, Zhao, Haiming, Song, Weibin, Lai, Jinsheng
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2019
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6347627/ https://www.ncbi.nlm.nih.gov/pubmed/30683940 http://dx.doi.org/10.1038/s41467-018-07876-6

Ejemplares similares

The genome of broomcorn millet
por: Zou, Changsong, et al.
Publicado: (2019)

Genetic Diversity and Population Structure of Broomcorn Millet (Panicum miliaceum L.) Cultivars and Landraces in China Based on Microsatellite Markers
por: Liu, Minxuan, et al.
Publicado: (2016)

The Alkali Tolerance of Broomcorn Millet (Panicum miliaceum L.) at the Germination and Seedling Stage: The Case of 296 Broomcorn Millet Genotypes
por: Ma, Qian, et al.
Publicado: (2021)

Phytolith analysis for differentiating between broomcorn millet (Panicum miliaceum) and its weed/feral type (Panicum ruderale)
por: Zhang, Jianping, et al.
Publicado: (2018)

A high-quality, phased genome assembly of broomcorn millet reveals the features of its subgenome evolution and 3D chromatin organization
por: Wang, Zhiheng, et al.
Publicado: (2023)

Identification and function analysis of yellow-leaf mutant (YX-yl) of broomcorn millet
por: Wang, Yushen, et al.
Publicado: (2022)

Genetic diversity and phylogeography of broomcorn millet (Panicum miliaceum L.) across Eurasia
por: Hunt, Harriet V, et al.
Publicado: (2011)

Reticulate evolution in Panicum (Poaceae): the origin of tetraploid broomcorn millet, P. miliaceum
por: Hunt, Harriet V., et al.
Publicado: (2014)

Genetic evidence for a western Chinese origin of broomcorn millet (Panicum miliaceum)
por: Hunt, Harriet V, et al.
Publicado: (2018)

Broomcorn and foxtail millet were cultivated in Taiwan about 5000 years ago
por: Tsang, Chen-Hwa, et al.
Publicado: (2017)

Microbiota Composition during Fermentation of Broomcorn Millet Huangjiu and Their Effects on Flavor Quality
por: Wang, Ke, et al.
Publicado: (2023)

Identification and fine-mapping of a major QTL (PH1.1) conferring plant height in broomcorn millet (Panicum miliaceum)
por: Liu, Tianpeng, et al.
Publicado: (2022)

Dynamic and Comparative Transcriptome Analyses Reveal Key Factors Contributing to Cadmium Tolerance in Broomcorn Millet
por: Liu, Jiajia, et al.
Publicado: (2022)

Shift in subsistence crop dominance from broomcorn millet to foxtail millet around 5500 BP in the western Loess Plateau
por: Yang, Yishi, et al.
Publicado: (2022)

Molecular Basis of the Waxy Endosperm Starch Phenotype in Broomcorn Millet (Panicum miliaceum L.)
por: Hunt, Harriet V., et al.
Publicado: (2010)

Genetic Divergence and Population Structure in Weedy and Cultivated Broomcorn Millets (Panicum miliaceum L.) Revealed by Specific-Locus Amplified Fragment Sequencing (SLAF-Seq)
por: Li, Chunxiang, et al.
Publicado: (2021)

Genomic resources of broomcorn millet: demonstration and application of a high-throughput BAC mapping pipeline
por: Xu, Wei, et al.
Publicado: (2021)

Leaf Transcriptome Analysis of Broomcorn Millet Uncovers Key Genes and Pathways in Response to Sporisorium destruens
por: Jin, Fei, et al.
Publicado: (2021)

Biochar and Nitrogen Fertilizer Change the Quality of Waxy and Non-Waxy Broomcorn Millet (Panicum miliaceum L.) Starch
por: Zhang, Miaomiao, et al.
Publicado: (2023)

Waxy Phenotype Evolution in the Allotetraploid Cereal Broomcorn Millet: Mutations at the GBSSI Locus in Their Functional and Phylogenetic Context
por: Hunt, Harriet V., et al.
Publicado: (2013)

The potential of stable carbon and nitrogen isotope analysis of foxtail and broomcorn millets for investigating ancient farming systems
por: Dong, Yu, et al.
Publicado: (2022)

Transcriptome-wide identification and expression profiles of the WRKY transcription factor family in Broomcorn millet (Panicum miliaceum L.)
por: Yue, Hong, et al.
Publicado: (2016)

De novo Assembly and Characterization of the Transcriptome of Broomcorn Millet (Panicum miliaceum L.) for Gene Discovery and Marker Development
por: Yue, Hong, et al.
Publicado: (2016)

Effect of Different Processing Methods on the Accumulation of the Phenolic Compounds and Antioxidant Profile of Broomcorn Millet (Panicum miliaceum L.) Flour
por: Kalam Azad, Md Obyedul, et al.
Publicado: (2019)

New AMS (14)C dates track the arrival and spread of broomcorn millet cultivation and agricultural change in prehistoric Europe
por: Filipović, Dragana, et al.
Publicado: (2020)

Genome-wide analysis of the NAC transcription factor family in broomcorn millet (Panicum miliaceum L.) and expression analysis under drought stress
por: Shan, Zhongying, et al.
Publicado: (2020)

Plant Stage, Not Drought Stress, Determines the Effect of Cultivars on Bacterial Community Diversity in the Rhizosphere of Broomcorn Millet (Panicum miliaceum L.)
por: Na, Xiaofan, et al.
Publicado: (2019)

The Identification of Broomcorn Millet bZIP Transcription Factors, Which Regulate Growth and Development to Enhance Stress Tolerance and Seed Germination
por: An, Peipei, et al.
Publicado: (2022)

An optimistic future of C(4) crop broomcorn millet (Panicum miliaceum L.) for food security under increasing atmospheric CO(2) concentrations
por: Shi, Xinrui, et al.
Publicado: (2022)

Long-range interactions between proximal and distal regulatory regions in maize
por: Li, En, et al.
Publicado: (2019)

Genome-Wide Identification of VQ Motif-Containing Proteins and their Expression Profiles Under Abiotic Stresses in Maize
por: Song, Weibin, et al.
Publicado: (2016)

Effects of drought stress and water recovery on physiological responses and gene expression in maize seedlings
por: Zhang, Xiangbo, et al.
Publicado: (2018)

Functional Characteristics of Lactic Acid Bacteria In Vitro Isolated from Spontaneously Fermented Sour Porridge with Broomcorn Millet in Northwestern Shanxi Province of China
por: Wang, Qi, et al.
Publicado: (2022)

Parent-of-origin-dependent nucleosome organization correlates with genomic imprinting in maize
por: Dong, Xiaomei, et al.
Publicado: (2018)

Determination of the Volatile Composition in Brown Millet, Milled Millet and Millet Bran by Gas Chromatography/Mass Spectrometry
por: Liu, Jingke, et al.
Publicado: (2012)

The Conforming Brain and Deontological Resolve
por: Pincus, Melanie, et al.
Publicado: (2014)

Structural characterization of helitrons and their stepwise capturing of gene fragments in the maize genome
por: Dong, Yongbin, et al.
Publicado: (2011)

Millet Disease
por: Hinebauch, T. D.
Publicado: (1893)

Millet Disease
por: Hinebauch, T. D.
Publicado: (1893)

Resolving spatial inconsistencies in chromosome conformation measurements
por: Duggal, Geet, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_mo6magoopibrnabn1glgs7j45v