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Poor Diagnostic Performance of a Species-Specific Loop-Mediated Isothermal Amplification (LAMP) Platform for Malaria

BACKGROUND: The objective of this study was to assess an in-house loop-mediated isothermal amplification (LAMP) platform for malaria parasite detection and identification on species level. METHODS: LAMP primers specific for the human Plasmodium spp., namely, P. falciparum, P. vivax, P. ovale, P. mal...

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Autores principales: Kollenda, Hans, Hagen, Ralf Matthias, Hanke, Miriam, Rojak, Sandra, Hinz, Rebecca, Wassill, Lars, Poppert, Sven, Tannich, Egbert, Frickmann, Hagen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Akadémiai Kiadó 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6348705/
https://www.ncbi.nlm.nih.gov/pubmed/30719327
http://dx.doi.org/10.1556/1886.2018.00020
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author Kollenda, Hans
Hagen, Ralf Matthias
Hanke, Miriam
Rojak, Sandra
Hinz, Rebecca
Wassill, Lars
Poppert, Sven
Tannich, Egbert
Frickmann, Hagen
author_facet Kollenda, Hans
Hagen, Ralf Matthias
Hanke, Miriam
Rojak, Sandra
Hinz, Rebecca
Wassill, Lars
Poppert, Sven
Tannich, Egbert
Frickmann, Hagen
author_sort Kollenda, Hans
collection PubMed
description BACKGROUND: The objective of this study was to assess an in-house loop-mediated isothermal amplification (LAMP) platform for malaria parasite detection and identification on species level. METHODS: LAMP primers specific for the human Plasmodium spp., namely, P. falciparum, P. vivax, P. ovale, P. malariae, and P. knowlesi, as well as genus-specific primers, were tested against a composite gold standard comprising microscopy from thick and thin blood films, commercial genus-specific Meridian illumigene Malaria LAMP, in-house real-time polymerase chain reaction (PCR), and commercial fast-track diagnostics (FTD) Malaria differentiation PCR. RESULTS: Of the 523 blood samples analyzed, the composite gold standard indicated 243 Plasmodium-species-DNA-containing samples (46.5%). Sensitivity and specificity of the analyzed genus- and species-specific LAMP primers were 71.0%–100.0% and 90.8%–100.0%, respectively. The influence of parasitemia was best documented for P. falciparum-specific LAMP with sensitivity values of 35.5% (22/62) for microscopically negative samples containing P. falciparum DNA, 50% (19/38) for parasitemia ≤50/μL, 84% (21/25) for parasitemia ≤500/μL, and 100% (92/92) for parasitemia >500/μL. CONCLUSIONS: In our hands, performance characteristics of species-specific in-house LAMP for malaria lack reliability required for diagnostic laboratories. The use of the easy-to-apply technique for surveillance purposes may be considered.
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spelling pubmed-63487052019-02-04 Poor Diagnostic Performance of a Species-Specific Loop-Mediated Isothermal Amplification (LAMP) Platform for Malaria Kollenda, Hans Hagen, Ralf Matthias Hanke, Miriam Rojak, Sandra Hinz, Rebecca Wassill, Lars Poppert, Sven Tannich, Egbert Frickmann, Hagen Eur J Microbiol Immunol (Bp) Original Research Paper BACKGROUND: The objective of this study was to assess an in-house loop-mediated isothermal amplification (LAMP) platform for malaria parasite detection and identification on species level. METHODS: LAMP primers specific for the human Plasmodium spp., namely, P. falciparum, P. vivax, P. ovale, P. malariae, and P. knowlesi, as well as genus-specific primers, were tested against a composite gold standard comprising microscopy from thick and thin blood films, commercial genus-specific Meridian illumigene Malaria LAMP, in-house real-time polymerase chain reaction (PCR), and commercial fast-track diagnostics (FTD) Malaria differentiation PCR. RESULTS: Of the 523 blood samples analyzed, the composite gold standard indicated 243 Plasmodium-species-DNA-containing samples (46.5%). Sensitivity and specificity of the analyzed genus- and species-specific LAMP primers were 71.0%–100.0% and 90.8%–100.0%, respectively. The influence of parasitemia was best documented for P. falciparum-specific LAMP with sensitivity values of 35.5% (22/62) for microscopically negative samples containing P. falciparum DNA, 50% (19/38) for parasitemia ≤50/μL, 84% (21/25) for parasitemia ≤500/μL, and 100% (92/92) for parasitemia >500/μL. CONCLUSIONS: In our hands, performance characteristics of species-specific in-house LAMP for malaria lack reliability required for diagnostic laboratories. The use of the easy-to-apply technique for surveillance purposes may be considered. Akadémiai Kiadó 2018-09-28 /pmc/articles/PMC6348705/ /pubmed/30719327 http://dx.doi.org/10.1556/1886.2018.00020 Text en © 2018, The Author(s) http://creativecommons.org/licenses/by-nc/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 International License (https://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted use, distribution, and reproduction in any medium for non-commercial purposes, provided the original author and source are credited, a link to the CC License is provided, and changes - if any – are indicated.
spellingShingle Original Research Paper
Kollenda, Hans
Hagen, Ralf Matthias
Hanke, Miriam
Rojak, Sandra
Hinz, Rebecca
Wassill, Lars
Poppert, Sven
Tannich, Egbert
Frickmann, Hagen
Poor Diagnostic Performance of a Species-Specific Loop-Mediated Isothermal Amplification (LAMP) Platform for Malaria
title Poor Diagnostic Performance of a Species-Specific Loop-Mediated Isothermal Amplification (LAMP) Platform for Malaria
title_full Poor Diagnostic Performance of a Species-Specific Loop-Mediated Isothermal Amplification (LAMP) Platform for Malaria
title_fullStr Poor Diagnostic Performance of a Species-Specific Loop-Mediated Isothermal Amplification (LAMP) Platform for Malaria
title_full_unstemmed Poor Diagnostic Performance of a Species-Specific Loop-Mediated Isothermal Amplification (LAMP) Platform for Malaria
title_short Poor Diagnostic Performance of a Species-Specific Loop-Mediated Isothermal Amplification (LAMP) Platform for Malaria
title_sort poor diagnostic performance of a species-specific loop-mediated isothermal amplification (lamp) platform for malaria
topic Original Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6348705/
https://www.ncbi.nlm.nih.gov/pubmed/30719327
http://dx.doi.org/10.1556/1886.2018.00020
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