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BioSankey: Visualization of Microbial Communities Over Time

Metagenomics provides quantitative measurements for microbial species over time. To obtain a global overview of an experiment and to explore the full potential of a given dataset, intuitive and interactive visualization tools are needed. Therefore, we established BioSankey to visualize microbial spe...

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Detalles Bibliográficos
Autores principales: Platzer, Alexander, Polzin, Julia, Rembart, Klaus, Han, Ping Penny, Rauer, Denise, Nussbaumer, Thomas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: De Gruyter 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6348749/
https://www.ncbi.nlm.nih.gov/pubmed/29897884
http://dx.doi.org/10.1515/jib-2017-0063
Descripción
Sumario:Metagenomics provides quantitative measurements for microbial species over time. To obtain a global overview of an experiment and to explore the full potential of a given dataset, intuitive and interactive visualization tools are needed. Therefore, we established BioSankey to visualize microbial species in microbiome studies over time as a Sankey diagram. These diagrams are embedded into a project-specific webpage which depends only on JavaScript and Google API to allow searches of interesting species without requiring a web server or connection to a database. BioSankey is a valuable tool to visualize different data elements from single or dual RNA-seq datasets and additionally enables a straightforward exchange of results among collaboration partners.