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BioSankey: Visualization of Microbial Communities Over Time

Metagenomics provides quantitative measurements for microbial species over time. To obtain a global overview of an experiment and to explore the full potential of a given dataset, intuitive and interactive visualization tools are needed. Therefore, we established BioSankey to visualize microbial spe...

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Detalles Bibliográficos
Autores principales: Platzer, Alexander, Polzin, Julia, Rembart, Klaus, Han, Ping Penny, Rauer, Denise, Nussbaumer, Thomas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: De Gruyter 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6348749/
https://www.ncbi.nlm.nih.gov/pubmed/29897884
http://dx.doi.org/10.1515/jib-2017-0063
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author Platzer, Alexander
Polzin, Julia
Rembart, Klaus
Han, Ping Penny
Rauer, Denise
Nussbaumer, Thomas
author_facet Platzer, Alexander
Polzin, Julia
Rembart, Klaus
Han, Ping Penny
Rauer, Denise
Nussbaumer, Thomas
author_sort Platzer, Alexander
collection PubMed
description Metagenomics provides quantitative measurements for microbial species over time. To obtain a global overview of an experiment and to explore the full potential of a given dataset, intuitive and interactive visualization tools are needed. Therefore, we established BioSankey to visualize microbial species in microbiome studies over time as a Sankey diagram. These diagrams are embedded into a project-specific webpage which depends only on JavaScript and Google API to allow searches of interesting species without requiring a web server or connection to a database. BioSankey is a valuable tool to visualize different data elements from single or dual RNA-seq datasets and additionally enables a straightforward exchange of results among collaboration partners.
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spelling pubmed-63487492019-01-28 BioSankey: Visualization of Microbial Communities Over Time Platzer, Alexander Polzin, Julia Rembart, Klaus Han, Ping Penny Rauer, Denise Nussbaumer, Thomas J Integr Bioinform Research Article Metagenomics provides quantitative measurements for microbial species over time. To obtain a global overview of an experiment and to explore the full potential of a given dataset, intuitive and interactive visualization tools are needed. Therefore, we established BioSankey to visualize microbial species in microbiome studies over time as a Sankey diagram. These diagrams are embedded into a project-specific webpage which depends only on JavaScript and Google API to allow searches of interesting species without requiring a web server or connection to a database. BioSankey is a valuable tool to visualize different data elements from single or dual RNA-seq datasets and additionally enables a straightforward exchange of results among collaboration partners. De Gruyter 2018-06-13 /pmc/articles/PMC6348749/ /pubmed/29897884 http://dx.doi.org/10.1515/jib-2017-0063 Text en ©2018, Alexander Platzer et al., published by De Gruyter, Berlin/Boston http://creativecommons.org/licenses/by-nc-nd/4.0 This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.
spellingShingle Research Article
Platzer, Alexander
Polzin, Julia
Rembart, Klaus
Han, Ping Penny
Rauer, Denise
Nussbaumer, Thomas
BioSankey: Visualization of Microbial Communities Over Time
title BioSankey: Visualization of Microbial Communities Over Time
title_full BioSankey: Visualization of Microbial Communities Over Time
title_fullStr BioSankey: Visualization of Microbial Communities Over Time
title_full_unstemmed BioSankey: Visualization of Microbial Communities Over Time
title_short BioSankey: Visualization of Microbial Communities Over Time
title_sort biosankey: visualization of microbial communities over time
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6348749/
https://www.ncbi.nlm.nih.gov/pubmed/29897884
http://dx.doi.org/10.1515/jib-2017-0063
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