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BioSankey: Visualization of Microbial Communities Over Time
Metagenomics provides quantitative measurements for microbial species over time. To obtain a global overview of an experiment and to explore the full potential of a given dataset, intuitive and interactive visualization tools are needed. Therefore, we established BioSankey to visualize microbial spe...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
De Gruyter
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6348749/ https://www.ncbi.nlm.nih.gov/pubmed/29897884 http://dx.doi.org/10.1515/jib-2017-0063 |
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author | Platzer, Alexander Polzin, Julia Rembart, Klaus Han, Ping Penny Rauer, Denise Nussbaumer, Thomas |
author_facet | Platzer, Alexander Polzin, Julia Rembart, Klaus Han, Ping Penny Rauer, Denise Nussbaumer, Thomas |
author_sort | Platzer, Alexander |
collection | PubMed |
description | Metagenomics provides quantitative measurements for microbial species over time. To obtain a global overview of an experiment and to explore the full potential of a given dataset, intuitive and interactive visualization tools are needed. Therefore, we established BioSankey to visualize microbial species in microbiome studies over time as a Sankey diagram. These diagrams are embedded into a project-specific webpage which depends only on JavaScript and Google API to allow searches of interesting species without requiring a web server or connection to a database. BioSankey is a valuable tool to visualize different data elements from single or dual RNA-seq datasets and additionally enables a straightforward exchange of results among collaboration partners. |
format | Online Article Text |
id | pubmed-6348749 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | De Gruyter |
record_format | MEDLINE/PubMed |
spelling | pubmed-63487492019-01-28 BioSankey: Visualization of Microbial Communities Over Time Platzer, Alexander Polzin, Julia Rembart, Klaus Han, Ping Penny Rauer, Denise Nussbaumer, Thomas J Integr Bioinform Research Article Metagenomics provides quantitative measurements for microbial species over time. To obtain a global overview of an experiment and to explore the full potential of a given dataset, intuitive and interactive visualization tools are needed. Therefore, we established BioSankey to visualize microbial species in microbiome studies over time as a Sankey diagram. These diagrams are embedded into a project-specific webpage which depends only on JavaScript and Google API to allow searches of interesting species without requiring a web server or connection to a database. BioSankey is a valuable tool to visualize different data elements from single or dual RNA-seq datasets and additionally enables a straightforward exchange of results among collaboration partners. De Gruyter 2018-06-13 /pmc/articles/PMC6348749/ /pubmed/29897884 http://dx.doi.org/10.1515/jib-2017-0063 Text en ©2018, Alexander Platzer et al., published by De Gruyter, Berlin/Boston http://creativecommons.org/licenses/by-nc-nd/4.0 This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License. |
spellingShingle | Research Article Platzer, Alexander Polzin, Julia Rembart, Klaus Han, Ping Penny Rauer, Denise Nussbaumer, Thomas BioSankey: Visualization of Microbial Communities Over Time |
title | BioSankey: Visualization of Microbial Communities Over Time |
title_full | BioSankey: Visualization of Microbial Communities Over Time |
title_fullStr | BioSankey: Visualization of Microbial Communities Over Time |
title_full_unstemmed | BioSankey: Visualization of Microbial Communities Over Time |
title_short | BioSankey: Visualization of Microbial Communities Over Time |
title_sort | biosankey: visualization of microbial communities over time |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6348749/ https://www.ncbi.nlm.nih.gov/pubmed/29897884 http://dx.doi.org/10.1515/jib-2017-0063 |
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