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A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae)

Members of the mint family (Lamiaceae) accumulate a wide variety of industrially and medicinally relevant diterpenes. We recently sequenced leaf transcriptomes from 48 phylogenetically diverse Lamiaceae species. Here, we summarize the available chemotaxonomic and enzyme activity data for diterpene s...

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Autores principales: Johnson, Sean R., Bhat, Wajid Waheed, Bibik, Jacob, Turmo, Aiko, Hamberger, Britta, Hamberger, Björn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Biochemistry and Molecular Biology 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6349103/
https://www.ncbi.nlm.nih.gov/pubmed/30498089
http://dx.doi.org/10.1074/jbc.RA118.006025
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author Johnson, Sean R.
Bhat, Wajid Waheed
Bibik, Jacob
Turmo, Aiko
Hamberger, Britta
Hamberger, Björn
author_facet Johnson, Sean R.
Bhat, Wajid Waheed
Bibik, Jacob
Turmo, Aiko
Hamberger, Britta
Hamberger, Björn
author_sort Johnson, Sean R.
collection PubMed
description Members of the mint family (Lamiaceae) accumulate a wide variety of industrially and medicinally relevant diterpenes. We recently sequenced leaf transcriptomes from 48 phylogenetically diverse Lamiaceae species. Here, we summarize the available chemotaxonomic and enzyme activity data for diterpene synthases (diTPSs) in the Lamiaceae and leverage the new transcriptomes to explore the diTPS sequence and functional space. Candidate genes were selected with an intent to evenly sample the sequence homology space and to focus on species in which diTPS transcripts were found, yet from which no diterpene structures have been previously reported. We functionally characterized nine class II diTPSs and 10 class I diTPSs from 11 distinct plant species and found five class II activities, including two novel activities, as well as a spectrum of class I activities. Among the class II diTPSs, we identified a neo-cleroda-4(18),13E-dienyl diphosphate synthase from Ajuga reptans, catalyzing the likely first step in the biosynthesis of a variety of insect-antifeedant compounds. Among the class I diTPSs was a palustradiene synthase from Origanum majorana, leading to the discovery of specialized diterpenes in that species. Our results provide insights into the diversification of diterpene biosynthesis in the mint family and establish a comprehensive foundation for continued investigation of diterpene biosynthesis in the Lamiaceae.
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spelling pubmed-63491032019-01-29 A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae) Johnson, Sean R. Bhat, Wajid Waheed Bibik, Jacob Turmo, Aiko Hamberger, Britta Hamberger, Björn J Biol Chem Plant Biology Members of the mint family (Lamiaceae) accumulate a wide variety of industrially and medicinally relevant diterpenes. We recently sequenced leaf transcriptomes from 48 phylogenetically diverse Lamiaceae species. Here, we summarize the available chemotaxonomic and enzyme activity data for diterpene synthases (diTPSs) in the Lamiaceae and leverage the new transcriptomes to explore the diTPS sequence and functional space. Candidate genes were selected with an intent to evenly sample the sequence homology space and to focus on species in which diTPS transcripts were found, yet from which no diterpene structures have been previously reported. We functionally characterized nine class II diTPSs and 10 class I diTPSs from 11 distinct plant species and found five class II activities, including two novel activities, as well as a spectrum of class I activities. Among the class II diTPSs, we identified a neo-cleroda-4(18),13E-dienyl diphosphate synthase from Ajuga reptans, catalyzing the likely first step in the biosynthesis of a variety of insect-antifeedant compounds. Among the class I diTPSs was a palustradiene synthase from Origanum majorana, leading to the discovery of specialized diterpenes in that species. Our results provide insights into the diversification of diterpene biosynthesis in the mint family and establish a comprehensive foundation for continued investigation of diterpene biosynthesis in the Lamiaceae. American Society for Biochemistry and Molecular Biology 2019-01-25 2018-11-29 /pmc/articles/PMC6349103/ /pubmed/30498089 http://dx.doi.org/10.1074/jbc.RA118.006025 Text en © 2019 Johnson et al. Published by The American Society for Biochemistry and Molecular Biology, Inc. Author's Choice—Final version open access under the terms of the Creative Commons CC-BY license (http://creativecommons.org/licenses/by/4.0) .
spellingShingle Plant Biology
Johnson, Sean R.
Bhat, Wajid Waheed
Bibik, Jacob
Turmo, Aiko
Hamberger, Britta
Hamberger, Björn
A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae)
title A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae)
title_full A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae)
title_fullStr A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae)
title_full_unstemmed A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae)
title_short A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae)
title_sort database-driven approach identifies additional diterpene synthase activities in the mint family (lamiaceae)
topic Plant Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6349103/
https://www.ncbi.nlm.nih.gov/pubmed/30498089
http://dx.doi.org/10.1074/jbc.RA118.006025
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