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A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae)
Members of the mint family (Lamiaceae) accumulate a wide variety of industrially and medicinally relevant diterpenes. We recently sequenced leaf transcriptomes from 48 phylogenetically diverse Lamiaceae species. Here, we summarize the available chemotaxonomic and enzyme activity data for diterpene s...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society for Biochemistry and Molecular Biology
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6349103/ https://www.ncbi.nlm.nih.gov/pubmed/30498089 http://dx.doi.org/10.1074/jbc.RA118.006025 |
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author | Johnson, Sean R. Bhat, Wajid Waheed Bibik, Jacob Turmo, Aiko Hamberger, Britta Hamberger, Björn |
author_facet | Johnson, Sean R. Bhat, Wajid Waheed Bibik, Jacob Turmo, Aiko Hamberger, Britta Hamberger, Björn |
author_sort | Johnson, Sean R. |
collection | PubMed |
description | Members of the mint family (Lamiaceae) accumulate a wide variety of industrially and medicinally relevant diterpenes. We recently sequenced leaf transcriptomes from 48 phylogenetically diverse Lamiaceae species. Here, we summarize the available chemotaxonomic and enzyme activity data for diterpene synthases (diTPSs) in the Lamiaceae and leverage the new transcriptomes to explore the diTPS sequence and functional space. Candidate genes were selected with an intent to evenly sample the sequence homology space and to focus on species in which diTPS transcripts were found, yet from which no diterpene structures have been previously reported. We functionally characterized nine class II diTPSs and 10 class I diTPSs from 11 distinct plant species and found five class II activities, including two novel activities, as well as a spectrum of class I activities. Among the class II diTPSs, we identified a neo-cleroda-4(18),13E-dienyl diphosphate synthase from Ajuga reptans, catalyzing the likely first step in the biosynthesis of a variety of insect-antifeedant compounds. Among the class I diTPSs was a palustradiene synthase from Origanum majorana, leading to the discovery of specialized diterpenes in that species. Our results provide insights into the diversification of diterpene biosynthesis in the mint family and establish a comprehensive foundation for continued investigation of diterpene biosynthesis in the Lamiaceae. |
format | Online Article Text |
id | pubmed-6349103 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American Society for Biochemistry and Molecular Biology |
record_format | MEDLINE/PubMed |
spelling | pubmed-63491032019-01-29 A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae) Johnson, Sean R. Bhat, Wajid Waheed Bibik, Jacob Turmo, Aiko Hamberger, Britta Hamberger, Björn J Biol Chem Plant Biology Members of the mint family (Lamiaceae) accumulate a wide variety of industrially and medicinally relevant diterpenes. We recently sequenced leaf transcriptomes from 48 phylogenetically diverse Lamiaceae species. Here, we summarize the available chemotaxonomic and enzyme activity data for diterpene synthases (diTPSs) in the Lamiaceae and leverage the new transcriptomes to explore the diTPS sequence and functional space. Candidate genes were selected with an intent to evenly sample the sequence homology space and to focus on species in which diTPS transcripts were found, yet from which no diterpene structures have been previously reported. We functionally characterized nine class II diTPSs and 10 class I diTPSs from 11 distinct plant species and found five class II activities, including two novel activities, as well as a spectrum of class I activities. Among the class II diTPSs, we identified a neo-cleroda-4(18),13E-dienyl diphosphate synthase from Ajuga reptans, catalyzing the likely first step in the biosynthesis of a variety of insect-antifeedant compounds. Among the class I diTPSs was a palustradiene synthase from Origanum majorana, leading to the discovery of specialized diterpenes in that species. Our results provide insights into the diversification of diterpene biosynthesis in the mint family and establish a comprehensive foundation for continued investigation of diterpene biosynthesis in the Lamiaceae. American Society for Biochemistry and Molecular Biology 2019-01-25 2018-11-29 /pmc/articles/PMC6349103/ /pubmed/30498089 http://dx.doi.org/10.1074/jbc.RA118.006025 Text en © 2019 Johnson et al. Published by The American Society for Biochemistry and Molecular Biology, Inc. Author's Choice—Final version open access under the terms of the Creative Commons CC-BY license (http://creativecommons.org/licenses/by/4.0) . |
spellingShingle | Plant Biology Johnson, Sean R. Bhat, Wajid Waheed Bibik, Jacob Turmo, Aiko Hamberger, Britta Hamberger, Björn A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae) |
title | A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae) |
title_full | A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae) |
title_fullStr | A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae) |
title_full_unstemmed | A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae) |
title_short | A database-driven approach identifies additional diterpene synthase activities in the mint family (Lamiaceae) |
title_sort | database-driven approach identifies additional diterpene synthase activities in the mint family (lamiaceae) |
topic | Plant Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6349103/ https://www.ncbi.nlm.nih.gov/pubmed/30498089 http://dx.doi.org/10.1074/jbc.RA118.006025 |
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