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Detecting sequences of system states in temporal networks
Many time-evolving systems in nature, society and technology leave traces of the interactions within them. These interactions form temporal networks that reflect the states of the systems. In this work, we pursue a coarse-grained description of these systems by proposing a method to assign discrete...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6349888/ https://www.ncbi.nlm.nih.gov/pubmed/30692579 http://dx.doi.org/10.1038/s41598-018-37534-2 |
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author | Masuda, Naoki Holme, Petter |
author_facet | Masuda, Naoki Holme, Petter |
author_sort | Masuda, Naoki |
collection | PubMed |
description | Many time-evolving systems in nature, society and technology leave traces of the interactions within them. These interactions form temporal networks that reflect the states of the systems. In this work, we pursue a coarse-grained description of these systems by proposing a method to assign discrete states to the systems and inferring the sequence of such states from the data. Such states could, for example, correspond to a mental state (as inferred from neuroimaging data) or the operational state of an organization (as inferred by interpersonal communication). Our method combines a graph distance measure and hierarchical clustering. Using several empirical data sets of social temporal networks, we show that our method is capable of inferring the system’s states such as distinct activities in a school and a weekday state as opposed to a weekend state. We expect the methods to be equally useful in other settings such as temporally varying protein interactions, ecological interspecific interactions, functional connectivity in the brain and adaptive social networks. |
format | Online Article Text |
id | pubmed-6349888 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-63498882019-01-30 Detecting sequences of system states in temporal networks Masuda, Naoki Holme, Petter Sci Rep Article Many time-evolving systems in nature, society and technology leave traces of the interactions within them. These interactions form temporal networks that reflect the states of the systems. In this work, we pursue a coarse-grained description of these systems by proposing a method to assign discrete states to the systems and inferring the sequence of such states from the data. Such states could, for example, correspond to a mental state (as inferred from neuroimaging data) or the operational state of an organization (as inferred by interpersonal communication). Our method combines a graph distance measure and hierarchical clustering. Using several empirical data sets of social temporal networks, we show that our method is capable of inferring the system’s states such as distinct activities in a school and a weekday state as opposed to a weekend state. We expect the methods to be equally useful in other settings such as temporally varying protein interactions, ecological interspecific interactions, functional connectivity in the brain and adaptive social networks. Nature Publishing Group UK 2019-01-28 /pmc/articles/PMC6349888/ /pubmed/30692579 http://dx.doi.org/10.1038/s41598-018-37534-2 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Masuda, Naoki Holme, Petter Detecting sequences of system states in temporal networks |
title | Detecting sequences of system states in temporal networks |
title_full | Detecting sequences of system states in temporal networks |
title_fullStr | Detecting sequences of system states in temporal networks |
title_full_unstemmed | Detecting sequences of system states in temporal networks |
title_short | Detecting sequences of system states in temporal networks |
title_sort | detecting sequences of system states in temporal networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6349888/ https://www.ncbi.nlm.nih.gov/pubmed/30692579 http://dx.doi.org/10.1038/s41598-018-37534-2 |
work_keys_str_mv | AT masudanaoki detectingsequencesofsystemstatesintemporalnetworks AT holmepetter detectingsequencesofsystemstatesintemporalnetworks |