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Keeping it light: (re)analyzing community-wide datasets without major infrastructure
DNA sequencing technology has revolutionized the field of biology, shifting biology from a data-limited to data-rich state. Central to the interpretation of sequencing data are the computational tools and approaches that convert raw data into biologically meaningful information. Both the tools and t...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6350038/ https://www.ncbi.nlm.nih.gov/pubmed/30544142 http://dx.doi.org/10.1093/gigascience/giy159 |
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author | Alexander, Harriet Johnson, Lisa K Brown, C Titus |
author_facet | Alexander, Harriet Johnson, Lisa K Brown, C Titus |
author_sort | Alexander, Harriet |
collection | PubMed |
description | DNA sequencing technology has revolutionized the field of biology, shifting biology from a data-limited to data-rich state. Central to the interpretation of sequencing data are the computational tools and approaches that convert raw data into biologically meaningful information. Both the tools and the generation of data are actively evolving, yet the practice of re-analysis of previously generated data with new tools is not commonplace. Re-analysis of existing data provides an affordable means of generating new information and will likely become more routine within biology, yet necessitates a new set of considerations for best practices and resource development. Here, we discuss several practices that we believe to be broadly applicable when re-analyzing data, especially when done by small research groups. |
format | Online Article Text |
id | pubmed-6350038 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-63500382019-02-08 Keeping it light: (re)analyzing community-wide datasets without major infrastructure Alexander, Harriet Johnson, Lisa K Brown, C Titus Gigascience Commentary DNA sequencing technology has revolutionized the field of biology, shifting biology from a data-limited to data-rich state. Central to the interpretation of sequencing data are the computational tools and approaches that convert raw data into biologically meaningful information. Both the tools and the generation of data are actively evolving, yet the practice of re-analysis of previously generated data with new tools is not commonplace. Re-analysis of existing data provides an affordable means of generating new information and will likely become more routine within biology, yet necessitates a new set of considerations for best practices and resource development. Here, we discuss several practices that we believe to be broadly applicable when re-analyzing data, especially when done by small research groups. Oxford University Press 2018-12-13 /pmc/articles/PMC6350038/ /pubmed/30544142 http://dx.doi.org/10.1093/gigascience/giy159 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Commentary Alexander, Harriet Johnson, Lisa K Brown, C Titus Keeping it light: (re)analyzing community-wide datasets without major infrastructure |
title | Keeping it light: (re)analyzing community-wide datasets without major infrastructure |
title_full | Keeping it light: (re)analyzing community-wide datasets without major infrastructure |
title_fullStr | Keeping it light: (re)analyzing community-wide datasets without major infrastructure |
title_full_unstemmed | Keeping it light: (re)analyzing community-wide datasets without major infrastructure |
title_short | Keeping it light: (re)analyzing community-wide datasets without major infrastructure |
title_sort | keeping it light: (re)analyzing community-wide datasets without major infrastructure |
topic | Commentary |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6350038/ https://www.ncbi.nlm.nih.gov/pubmed/30544142 http://dx.doi.org/10.1093/gigascience/giy159 |
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