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Keeping it light: (re)analyzing community-wide datasets without major infrastructure

DNA sequencing technology has revolutionized the field of biology, shifting biology from a data-limited to data-rich state. Central to the interpretation of sequencing data are the computational tools and approaches that convert raw data into biologically meaningful information. Both the tools and t...

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Detalles Bibliográficos
Autores principales: Alexander, Harriet, Johnson, Lisa K, Brown, C Titus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6350038/
https://www.ncbi.nlm.nih.gov/pubmed/30544142
http://dx.doi.org/10.1093/gigascience/giy159
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author Alexander, Harriet
Johnson, Lisa K
Brown, C Titus
author_facet Alexander, Harriet
Johnson, Lisa K
Brown, C Titus
author_sort Alexander, Harriet
collection PubMed
description DNA sequencing technology has revolutionized the field of biology, shifting biology from a data-limited to data-rich state. Central to the interpretation of sequencing data are the computational tools and approaches that convert raw data into biologically meaningful information. Both the tools and the generation of data are actively evolving, yet the practice of re-analysis of previously generated data with new tools is not commonplace. Re-analysis of existing data provides an affordable means of generating new information and will likely become more routine within biology, yet necessitates a new set of considerations for best practices and resource development. Here, we discuss several practices that we believe to be broadly applicable when re-analyzing data, especially when done by small research groups.
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spelling pubmed-63500382019-02-08 Keeping it light: (re)analyzing community-wide datasets without major infrastructure Alexander, Harriet Johnson, Lisa K Brown, C Titus Gigascience Commentary DNA sequencing technology has revolutionized the field of biology, shifting biology from a data-limited to data-rich state. Central to the interpretation of sequencing data are the computational tools and approaches that convert raw data into biologically meaningful information. Both the tools and the generation of data are actively evolving, yet the practice of re-analysis of previously generated data with new tools is not commonplace. Re-analysis of existing data provides an affordable means of generating new information and will likely become more routine within biology, yet necessitates a new set of considerations for best practices and resource development. Here, we discuss several practices that we believe to be broadly applicable when re-analyzing data, especially when done by small research groups. Oxford University Press 2018-12-13 /pmc/articles/PMC6350038/ /pubmed/30544142 http://dx.doi.org/10.1093/gigascience/giy159 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Commentary
Alexander, Harriet
Johnson, Lisa K
Brown, C Titus
Keeping it light: (re)analyzing community-wide datasets without major infrastructure
title Keeping it light: (re)analyzing community-wide datasets without major infrastructure
title_full Keeping it light: (re)analyzing community-wide datasets without major infrastructure
title_fullStr Keeping it light: (re)analyzing community-wide datasets without major infrastructure
title_full_unstemmed Keeping it light: (re)analyzing community-wide datasets without major infrastructure
title_short Keeping it light: (re)analyzing community-wide datasets without major infrastructure
title_sort keeping it light: (re)analyzing community-wide datasets without major infrastructure
topic Commentary
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6350038/
https://www.ncbi.nlm.nih.gov/pubmed/30544142
http://dx.doi.org/10.1093/gigascience/giy159
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